(45 nodes) Fatty acid metabolism network (gamma proteobacterium L18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000497835_05119	Hypothetical protein. (135 aa)
	crt_1	Short-chain-enoyl-CoA hydratase. (370 aa)
	fadD_1	Long-chain-fatty-acid--CoA ligase. (562 aa)
	fadD_2	Long-chain-fatty-acid--CoA ligase. (565 aa)
	ppsC_1	Plipastatin synthase subunit C. (248 aa)
	fabF_2	3-oxoacyl-[acyl-carrier-protein] synthase 2. (414 aa)
	fadI	3-ketoacyl-CoA thiolase. (425 aa)
	bbsG	(R)-benzylsuccinyl-CoA dehydrogenase. (409 aa)
	thlA	Acetyl-CoA acetyltransferase. (395 aa)
	gdhI_1	Glucose 1-dehydrogenase 1. (248 aa)
	fabZ	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ. (146 aa)
	accA	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha. (315 aa)
	fabG_9	3-oxoacyl-[acyl-carrier-protein] reductase FabG. (447 aa)
	accB_1	Biotin carboxyl carrier protein of acetyl-CoA carboxylase. (153 aa)
	accC_1	Biotin carboxylase. (453 aa)
	GCA_000497835_03717	Hypothetical protein. (394 aa)
	madC	Malonyl-S-ACP:biotin-protein carboxyltransferase MADC. (534 aa)
	fabD_2	Malonyl CoA-acyl carrier protein transacylase. (308 aa)
	kshB	3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component. (366 aa)
	ddl_2	D-alanine--D-alanine ligase. (398 aa)
	fabV	Enoyl-[acyl-carrier-protein] reductase [NADH]. (398 aa)
	fadA_3	3-ketoacyl-CoA thiolase. (397 aa)
	cfiB	2-oxoglutarate carboxylase small subunit. (488 aa)
	paaJ	3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase. (401 aa)
	accC_2	Biotin carboxylase. (450 aa)
	accB_2	Biotin carboxyl carrier protein of acetyl-CoA carboxylase. (143 aa)
	accD	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta. (306 aa)
	fabH	3-oxoacyl-[acyl-carrier-protein] synthase 3. (307 aa)
	fabB	3-oxoacyl-[acyl-carrier-protein] synthase 1. (406 aa)
	GCA_000497835_00583	Beta-ketodecanoyl-[acyl-carrier-protein] synthase. (373 aa)
	fadA_1	3-ketoacyl-CoA thiolase. (393 aa)
	fabF_1	3-oxoacyl-[acyl-carrier-protein] synthase 2. (429 aa)
	fadB_1	Putative enoyl-CoA hydratase. (229 aa)
	fadE	Acyl-coenzyme A dehydrogenase. (815 aa)
	fabD_1	Malonyl CoA-acyl carrier protein transacylase. (313 aa)
	fabG_1	3-oxoacyl-[acyl-carrier-protein] reductase FabG. (246 aa)
	pcaF	Beta-ketoadipyl-CoA thiolase. (400 aa)
	GCA_000497835_00179	Hypothetical protein. (297 aa)
	fadA_2	3-ketoacyl-CoA thiolase. (391 aa)
	fadB_2	Fatty acid oxidation complex subunit alpha. (715 aa)
	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase. (171 aa)
	echA8_2	Putative enoyl-CoA hydratase echA8. (362 aa)
	bktB	Beta-ketothiolase BktB. (393 aa)
	phaA	Acetyl-CoA acetyltransferase. (393 aa)
	paaF	2,3-dehydroadipyl-CoA hydratase. (256 aa)

Your Current Organism:

gamma proteobacterium L18

NCBI taxonomy Id: 1229486
Other names: g. proteobacterium L18

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_000497835_00179	bktB	GCA_000497835_00179	GCA_000497835_01379	Hypothetical protein.	Beta-ketothiolase BktB.	0.499
GCA_000497835_00179	crt_1	GCA_000497835_00179	GCA_000497835_00259	Hypothetical protein.	Short-chain-enoyl-CoA hydratase.	0.471
GCA_000497835_00179	echA8_2	GCA_000497835_00179	GCA_000497835_01658	Hypothetical protein.	Putative enoyl-CoA hydratase echA8.	0.471
GCA_000497835_00179	fadA_1	GCA_000497835_00179	GCA_000497835_00677	Hypothetical protein.	3-ketoacyl-CoA thiolase.	0.499
GCA_000497835_00179	fadA_2	GCA_000497835_00179	GCA_000497835_01939	Hypothetical protein.	3-ketoacyl-CoA thiolase.	0.739
GCA_000497835_00179	fadA_3	GCA_000497835_00179	GCA_000497835_04394	Hypothetical protein.	3-ketoacyl-CoA thiolase.	0.739
GCA_000497835_00179	fadB_1	GCA_000497835_00179	GCA_000497835_00768	Hypothetical protein.	Putative enoyl-CoA hydratase.	0.667
GCA_000497835_00179	fadB_2	GCA_000497835_00179	GCA_000497835_01940	Hypothetical protein.	Fatty acid oxidation complex subunit alpha.	0.907
GCA_000497835_00179	fadD_1	GCA_000497835_00179	GCA_000497835_00578	Hypothetical protein.	Long-chain-fatty-acid--CoA ligase.	0.598
GCA_000497835_00179	fadD_2	GCA_000497835_00179	GCA_000497835_00579	Hypothetical protein.	Long-chain-fatty-acid--CoA ligase.	0.598
GCA_000497835_00179	fadI	GCA_000497835_00179	GCA_000497835_03263	Hypothetical protein.	3-ketoacyl-CoA thiolase.	0.499
GCA_000497835_00179	paaF	GCA_000497835_00179	GCA_000497835_00965	Hypothetical protein.	2,3-dehydroadipyl-CoA hydratase.	0.724
GCA_000497835_00179	paaJ	GCA_000497835_00179	GCA_000497835_00962	Hypothetical protein.	3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase.	0.499
GCA_000497835_00179	pcaF	GCA_000497835_00179	GCA_000497835_00213	Hypothetical protein.	Beta-ketoadipyl-CoA thiolase.	0.499
GCA_000497835_00179	phaA	GCA_000497835_00179	GCA_000497835_01041	Hypothetical protein.	Acetyl-CoA acetyltransferase.	0.499
GCA_000497835_00179	thlA	GCA_000497835_00179	GCA_000497835_03109	Hypothetical protein.	Acetyl-CoA acetyltransferase.	0.739
GCA_000497835_00583	GCA_000497835_05119	GCA_000497835_00583	GCA_000497835_05119	Beta-ketodecanoyl-[acyl-carrier-protein] synthase.	Hypothetical protein.	0.777
GCA_000497835_00583	accA	GCA_000497835_00583	GCA_000497835_02358	Beta-ketodecanoyl-[acyl-carrier-protein] synthase.	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha.	0.857
GCA_000497835_00583	accB_1	GCA_000497835_00583	GCA_000497835_03296	Beta-ketodecanoyl-[acyl-carrier-protein] synthase.	Biotin carboxyl carrier protein of acetyl-CoA carboxylase.	0.813
GCA_000497835_00583	accB_2	GCA_000497835_00583	GCA_000497835_05123	Beta-ketodecanoyl-[acyl-carrier-protein] synthase.	Biotin carboxyl carrier protein of acetyl-CoA carboxylase.	0.812