13 items (Pestalotiopsis fici) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PFICI_14812	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
	PFICI_13670	60S ribosomal protein L31. (120 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	PFICI_08803	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (97 aa)
	PFICI_08898	40S ribosomal protein S10-A. (165 aa)
	PFICI_08804	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (292 aa)
	PFICI_08035	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (156 aa)
	PFICI_05318	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PFICI_05642	40S ribosomal protein S17. (168 aa)
	PFICI_02856	40S ribosomal protein S27. (100 aa)
	PFICI_00927	40S ribosomal protein S28. (68 aa)
	PFICI_01804	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (154 aa)

Your Current Organism:

Pestalotiopsis fici

NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFICI_00927	PFICI_01804	W3XM80	W3XRU8	40S ribosomal protein S28.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
PFICI_00927	PFICI_02856	W3XM80	W3XHX7	40S ribosomal protein S28.	40S ribosomal protein S27.	0.999
PFICI_00927	PFICI_05318	W3XM80	W3XDE9	40S ribosomal protein S28.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
PFICI_00927	PFICI_05642	W3XM80	W3XF11	40S ribosomal protein S28.	40S ribosomal protein S17.	0.999
PFICI_00927	PFICI_08035	W3XM80	W3X5P6	40S ribosomal protein S28.	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
PFICI_00927	PFICI_08803	W3XM80	W3WYM3	40S ribosomal protein S28.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
PFICI_00927	PFICI_08804	W3XM80	W3X1A9	40S ribosomal protein S28.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
PFICI_00927	PFICI_08898	W3XM80	W3WYW0	40S ribosomal protein S28.	40S ribosomal protein S10-A.	0.997
PFICI_00927	PFICI_13670	W3XM80	W3WQS8	40S ribosomal protein S28.	60S ribosomal protein L31.	0.999
PFICI_00927	PFICI_14812	W3XM80	W3WM36	40S ribosomal protein S28.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
PFICI_00927	RPS0	W3XM80	W3X2D9	40S ribosomal protein S28.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
PFICI_00927	RPS1	W3XM80	W3WSA1	40S ribosomal protein S28.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
PFICI_01804	PFICI_00927	W3XRU8	W3XM80	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S28.	0.999
PFICI_01804	PFICI_02856	W3XRU8	W3XHX7	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S27.	0.999
PFICI_01804	PFICI_05318	W3XRU8	W3XDE9	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
PFICI_01804	PFICI_05642	W3XRU8	W3XF11	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S17.	0.999
PFICI_01804	PFICI_08035	W3XRU8	W3X5P6	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
PFICI_01804	PFICI_08803	W3XRU8	W3WYM3	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
PFICI_01804	PFICI_08804	W3XRU8	W3X1A9	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
PFICI_01804	PFICI_08898	W3XRU8	W3WYW0	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S10-A.	0.999