STRINGSTRING
PFICI_13367 PFICI_13367 PFICI_13660 PFICI_13660 PFICI_12466 PFICI_12466 PFICI_09166 PFICI_09166 PFICI_07414 PFICI_07414 PFICI_07133 PFICI_07133 PFICI_04533 PFICI_04533 PFICI_05234 PFICI_05234 PFICI_05805 PFICI_05805 LSM4 LSM4 PFICI_03105 PFICI_03105 PFICI_02451 PFICI_02451 PFICI_00232 PFICI_00232 PFICI_00681 PFICI_00681 PFICI_00613 PFICI_00613
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PFICI_13367U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
PFICI_13660U5 small nuclear ribonucleoprotein component. (986 aa)
PFICI_12466RRM domain-containing protein. (389 aa)
PFICI_09166Nucleolar protein 58. (612 aa)
PFICI_07414Pre-mRNA-splicing factor CWC2. (388 aa)
PFICI_07133Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
PFICI_04533U2 small nuclear ribonucleoprotein A. (249 aa)
PFICI_05234Uncharacterized protein. (245 aa)
PFICI_05805Pre-mRNA-processing-splicing factor 8. (2374 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (112 aa)
PFICI_03105Uncharacterized protein. (1021 aa)
PFICI_02451Pre-mRNA-splicing factor slt-11. (382 aa)
PFICI_00232WD_REPEATS_REGION domain-containing protein. (524 aa)
PFICI_00681Bin3-type SAM domain-containing protein. (232 aa)
PFICI_00613RRM domain-containing protein. (203 aa)
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
Server load: low (16%) [HD]