15 items (Pestalotiopsis fici) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	PFICI_13367	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
	PFICI_13660	U5 small nuclear ribonucleoprotein component. (986 aa)
	PFICI_12466	RRM domain-containing protein. (389 aa)
	PFICI_09166	Nucleolar protein 58. (612 aa)
	PFICI_07414	Pre-mRNA-splicing factor CWC2. (388 aa)
	PFICI_07133	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	PFICI_04533	U2 small nuclear ribonucleoprotein A. (249 aa)
	PFICI_05234	Uncharacterized protein. (245 aa)
	PFICI_05805	Pre-mRNA-processing-splicing factor 8. (2374 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (112 aa)
	PFICI_03105	Uncharacterized protein. (1021 aa)
	PFICI_02451	Pre-mRNA-splicing factor slt-11. (382 aa)
	PFICI_00232	WD_REPEATS_REGION domain-containing protein. (524 aa)
	PFICI_00681	Bin3-type SAM domain-containing protein. (232 aa)
	PFICI_00613	RRM domain-containing protein. (203 aa)

Your Current Organism:

Pestalotiopsis fici

NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	PFICI_00232	W3XDL2	W3XK60	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.968
LSM4	PFICI_00613	W3XDL2	W3XLD5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.748
LSM4	PFICI_02451	W3XDL2	W3XGS8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor slt-11.	0.519
LSM4	PFICI_03105	W3XDL2	W3XGB7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.993
LSM4	PFICI_04533	W3XDL2	W3XB27	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 small nuclear ribonucleoprotein A.	0.925
LSM4	PFICI_05234	W3XDL2	W3XB98	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.748
LSM4	PFICI_05805	W3XDL2	W3XD34	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing-splicing factor 8.	0.926
LSM4	PFICI_07133	W3XDL2	W3XAD7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.890
LSM4	PFICI_12466	W3XDL2	W3WQT7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.793
LSM4	PFICI_13367	W3XDL2	W3WLY8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.876
LSM4	PFICI_13660	W3XDL2	W3WQS0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U5 small nuclear ribonucleoprotein component.	0.923
PFICI_00232	LSM4	W3XK60	W3XDL2	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.968
PFICI_00232	PFICI_00613	W3XK60	W3XLD5	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.714
PFICI_00232	PFICI_00681	W3XK60	W3XLA7	WD_REPEATS_REGION domain-containing protein.	Bin3-type SAM domain-containing protein.	0.477
PFICI_00232	PFICI_03105	W3XK60	W3XGB7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.798
PFICI_00232	PFICI_04533	W3XK60	W3XB27	WD_REPEATS_REGION domain-containing protein.	U2 small nuclear ribonucleoprotein A.	0.928
PFICI_00232	PFICI_05234	W3XK60	W3XB98	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.714
PFICI_00232	PFICI_05805	W3XK60	W3XD34	WD_REPEATS_REGION domain-containing protein.	Pre-mRNA-processing-splicing factor 8.	0.993
PFICI_00232	PFICI_07133	W3XK60	W3XAD7	WD_REPEATS_REGION domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.993
PFICI_00232	PFICI_12466	W3XK60	W3WQT7	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.520