80 items (Pestalotiopsis fici) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PFICI_06889	U3 small nucleolar ribonucleoprotein IMP4. (298 aa)
	PFICI_11702	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (184 aa)
	PFICI_12596	Uncharacterized protein. (1798 aa)
	PFICI_12082	Uncharacterized protein. (340 aa)
	PFICI_12961	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (262 aa)
	PFICI_12650	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5004 aa)
	PFICI_12091	Uncharacterized protein. (591 aa)
	PFICI_11113	Uncharacterized protein. (435 aa)
	PFICI_11703	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (681 aa)
	PFICI_09821	WD_REPEATS_REGION domain-containing protein. (651 aa)
	PFICI_10915	WD_REPEATS_REGION domain-containing protein. (906 aa)
	PFICI_11206	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (491 aa)
	PFICI_10260	Uncharacterized protein. (901 aa)
	PFICI_10425	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (332 aa)
	PFICI_08598	Uncharacterized protein. (761 aa)
	PFICI_09953	BUD22 domain-containing protein. (506 aa)
	PFICI_08903	Bms1-type G domain-containing protein. (814 aa)
	PFICI_08902	WD_REPEATS_REGION domain-containing protein. (554 aa)
	PFICI_09166	Nucleolar protein 58. (612 aa)
	PFICI_08990	Ribosome biogenesis protein BRX1. (311 aa)
	PFICI_08954	WD_REPEATS_REGION domain-containing protein. (445 aa)
	PFICI_08989	Uncharacterized protein. (373 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (483 aa)
	PFICI_07908	rRNA-processing protein FCF1. (198 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (846 aa)
	PFICI_08113	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
	PFICI_07430	Uncharacterized protein. (400 aa)
	PFICI_08328	Uncharacterized protein. (1219 aa)
	PFICI_07760	Uncharacterized protein. (237 aa)
	PFICI_08046	rRNA 2'-O-methyltransferase fibrillarin. (319 aa)
	PFICI_08056	Periodic tryptophan protein 2. (904 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (682 aa)
	PFICI_06196	Uncharacterized protein. (970 aa)
	PFICI_08000	Kri1_C domain-containing protein. (633 aa)
	PFICI_06640	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (736 aa)
	PFICI_06622	U3 small nucleolar ribonucleoprotein IMP3. (183 aa)
	PFICI_05994	Uncharacterized protein. (370 aa)
	PFICI_08335	Protein MAK16; Belongs to the MAK16 family. (325 aa)
	PFICI_06825	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	PFICI_06259	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (276 aa)
	PFICI_07130	Uncharacterized protein. (310 aa)
	PFICI_06243	HMG box domain-containing protein. (332 aa)
	PFICI_07152	Uncharacterized protein. (787 aa)
	PFICI_07212	WD_REPEATS_REGION domain-containing protein. (538 aa)
	PFICI_04211	Uncharacterized protein. (373 aa)
	PFICI_04366	Bms1-type G domain-containing protein. (1139 aa)
	PFICI_04381	Uncharacterized protein. (385 aa)
	PFICI_07133	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	PFICI_04503	Uncharacterized protein. (487 aa)
	PFICI_04502	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (325 aa)
	PFICI_05614	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (661 aa)
	PFICI_05665	Uncharacterized protein. (1044 aa)
	PFICI_05891	Sas10 domain-containing protein. (618 aa)
	PFICI_02728	Uncharacterized protein. (400 aa)
	PFICI_05908	Rsa3 domain-containing protein. (105 aa)
	PFICI_05917	Zinc finger protein bud20. (119 aa)
	PFICI_03744	Brix domain-containing protein. (417 aa)
	PFICI_03546	U3 small nucleolar RNA-associated protein 22. (1065 aa)
	PFICI_00422	Uncharacterized protein. (901 aa)
	PFICI_00428	Uncharacterized protein. (405 aa)
	PFICI_04171	Uncharacterized protein. (329 aa)
	PFICI_00693	Uncharacterized protein. (256 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (762 aa)
	PFICI_00515	Uncharacterized protein. (304 aa)
	PFICI_01091	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (176 aa)
	PFICI_00585	PUM-HD domain-containing protein. (712 aa)
	PFICI_01162	Ribosome biogenesis protein nsa2. (260 aa)
	PFICI_00830	WD_REPEATS_REGION domain-containing protein. (598 aa)
	PFICI_01317	CBF domain-containing protein. (546 aa)
	PFICI_01538	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (279 aa)
	PFICI_01475	CP-type G domain-containing protein. (544 aa)
	PFICI_01229	DRIM domain-containing protein. (2664 aa)
	PFICI_02013	WD_REPEATS_REGION domain-containing protein. (962 aa)
	PFICI_15367	Brix domain-containing protein. (460 aa)
	PFICI_14402	HAD_SAK_1 domain-containing protein. (684 aa)
	PFICI_13083	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (411 aa)
	PFICI_13267	Uncharacterized protein. (855 aa)
	PFICI_13639	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (593 aa)
	PFICI_13684	WD_REPEATS_REGION domain-containing protein. (900 aa)
	PFICI_12259	Nucleolar protein 56. (506 aa)

Your Current Organism:

Pestalotiopsis fici

NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	NOP7	W3XM69	W3X565	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	PFICI_00422	W3XM69	W3XKQ6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.842
ERB1	PFICI_00428	W3XM69	W3XKS8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.519
ERB1	PFICI_00515	W3XM69	W3XMG7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.410
ERB1	PFICI_00585	W3XM69	W3XMN4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	PUM-HD domain-containing protein.	0.724
ERB1	PFICI_00693	W3XM69	W3XLL2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.992
ERB1	PFICI_00830	W3XM69	W3XNA3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.974
ERB1	PFICI_01091	W3XM69	W3XMK1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.741
ERB1	PFICI_01162	W3XM69	W3XMX3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein nsa2.	0.858
ERB1	PFICI_01229	W3XM69	W3XQ72	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	DRIM domain-containing protein.	0.585
ERB1	PFICI_01317	W3XM69	W3XNC2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CBF domain-containing protein.	0.782
ERB1	PFICI_01475	W3XM69	W3XQ61	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CP-type G domain-containing protein.	0.999
ERB1	PFICI_02013	W3XM69	W3XQD7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.965
ERB1	PFICI_02728	W3XM69	W3XF29	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.677
ERB1	PFICI_03546	W3XM69	W3XJT6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein 22.	0.833
ERB1	PFICI_03744	W3XM69	W3XIA7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix domain-containing protein.	0.968
ERB1	PFICI_04171	W3XM69	W3XLK8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.807
ERB1	PFICI_04211	W3XM69	W3X8H3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.495
ERB1	PFICI_04366	W3XM69	W3X8X1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Bms1-type G domain-containing protein.	0.856
ERB1	PFICI_04381	W3XM69	W3X8Y6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.994