(54 nodes) AMP-binding enzyme, C-terminal domain superfamily network (Pestalotiopsis fici)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PFICI_11017	AMP-binding domain-containing protein. (697 aa)
	PFICI_15331	Carrier domain-containing protein. (2745 aa)
	PFICI_14616	Uncharacterized protein. (1771 aa)
	PFICI_13809	Uncharacterized protein. (606 aa)
	PFICI_14936	Uncharacterized protein. (1040 aa)
	PFICI_14374	Uncharacterized protein. (638 aa)
	PFICI_14365	AMP-binding domain-containing protein. (623 aa)
	PFICI_13208	Carrier domain-containing protein. (935 aa)
	PFICI_13468	Uncharacterized protein. (631 aa)
	PFICI_13707	AMP-binding domain-containing protein. (1179 aa)
	PFICI_13733	Uncharacterized protein. (555 aa)
	PFICI_12967	Uncharacterized protein. (574 aa)
	PFICI_11646	DMAP-interaction domain-containing protein. (1813 aa)
	PFICI_11670	Uncharacterized protein. (567 aa)
	PFICI_11756	L-aminoadipate-semialdehyde dehydrogenase large subunit. (1170 aa)
	PFICI_02081	Carrier domain-containing protein. (1282 aa)
	PFICI_01040	Uncharacterized protein. (9212 aa)
	PFICI_01222	Uncharacterized protein. (556 aa)
	PFICI_00504	Uncharacterized protein. (582 aa)
	PFICI_00329	AMP-binding domain-containing protein. (1026 aa)
	PFICI_00196	Uncharacterized protein. (562 aa)
	PFICI_00152	Uncharacterized protein. (6133 aa)
	PFICI_00142	Uncharacterized protein. (573 aa)
	PFICI_02712	Uncharacterized protein. (633 aa)
	PFICI_02401	AMP-binding domain-containing protein. (671 aa)
	PFICI_03128	Carrier domain-containing protein. (1621 aa)
	PFICI_02452	Uncharacterized protein. (573 aa)
	PFICI_02312	Uncharacterized protein. (583 aa)
	PFICI_02307	Carrier domain-containing protein. (1166 aa)
	PFICI_02217	Uncharacterized protein. (579 aa)
	PFICI_02167	Uncharacterized protein. (577 aa)
	PFICI_02554	Uncharacterized protein. (4659 aa)
	PFICI_02313	Uncharacterized protein. (1679 aa)
	PFICI_05876	Uncharacterized protein. (691 aa)
	PFICI_05789	Uncharacterized protein. (577 aa)
	PFICI_05764	Uncharacterized protein. (2169 aa)
	PFICI_04360	Uncharacterized protein. (2717 aa)
	PFICI_07226	Uncharacterized protein. (568 aa)
	PFICI_06234	Uncharacterized protein. (607 aa)
	PFICI_06767	Peroxisomal-coenzyme A synthetase. (516 aa)
	PFICI_08385	Uncharacterized protein. (2666 aa)
	PFICI_06351	Uncharacterized protein. (2495 aa)
	PFICI_06300	Uncharacterized protein. (696 aa)
	PFICI_07715	Uncharacterized protein. (560 aa)
	PFICI_09514	Uncharacterized protein. (2803 aa)
	PFICI_07789	Uncharacterized protein. (2468 aa)
	PFICI_10013	Uncharacterized protein. (558 aa)
	PFICI_08738	Carrier domain-containing protein. (1306 aa)
	PFICI_10656	Uncharacterized protein. (4905 aa)
	PFICI_09663	Uncharacterized protein. (1569 aa)
	PFICI_09795	Uncharacterized protein. (633 aa)
	PFICI_11212	Acetyl-coenzyme A synthetase. (666 aa)
	PFICI_11098	Uncharacterized protein. (574 aa)
	PFICI_11786	Uncharacterized protein. (5498 aa)

Your Current Organism:

Pestalotiopsis fici

NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFICI_00142	PFICI_02307	W3XJW5	W3XFU8	Uncharacterized protein.	Carrier domain-containing protein.	0.464
PFICI_00142	PFICI_02401	W3XJW5	W3XGN8	Uncharacterized protein.	AMP-binding domain-containing protein.	0.454
PFICI_00142	PFICI_05876	W3XJW5	W3XD68	Uncharacterized protein.	Uncharacterized protein.	0.454
PFICI_00142	PFICI_06300	W3XJW5	W3X5B6	Uncharacterized protein.	Uncharacterized protein.	0.454
PFICI_00142	PFICI_11017	W3XJW5	W3WTF4	Uncharacterized protein.	AMP-binding domain-containing protein.	0.454
PFICI_00142	PFICI_11212	W3XJW5	W3WTY7	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.454
PFICI_00196	PFICI_02401	W3XK02	W3XGN8	Uncharacterized protein.	AMP-binding domain-containing protein.	0.454
PFICI_00196	PFICI_05876	W3XK02	W3XD68	Uncharacterized protein.	Uncharacterized protein.	0.454
PFICI_00196	PFICI_06300	W3XK02	W3X5B6	Uncharacterized protein.	Uncharacterized protein.	0.454
PFICI_00196	PFICI_11017	W3XK02	W3WTF4	Uncharacterized protein.	AMP-binding domain-containing protein.	0.454
PFICI_00196	PFICI_11212	W3XK02	W3WTY7	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.454
PFICI_00196	PFICI_13707	W3XK02	W3WN10	Uncharacterized protein.	AMP-binding domain-containing protein.	0.411
PFICI_00329	PFICI_05789	W3XMI9	W3XCT4	AMP-binding domain-containing protein.	Uncharacterized protein.	0.514
PFICI_00329	PFICI_06767	W3XMI9	W3X6U2	AMP-binding domain-containing protein.	Peroxisomal-coenzyme A synthetase.	0.593
PFICI_00329	PFICI_13208	W3XMI9	W3WLV0	AMP-binding domain-containing protein.	Carrier domain-containing protein.	0.557
PFICI_00504	PFICI_02401	W3XN22	W3XGN8	Uncharacterized protein.	AMP-binding domain-containing protein.	0.454
PFICI_00504	PFICI_05876	W3XN22	W3XD68	Uncharacterized protein.	Uncharacterized protein.	0.454
PFICI_00504	PFICI_06300	W3XN22	W3X5B6	Uncharacterized protein.	Uncharacterized protein.	0.454
PFICI_00504	PFICI_11017	W3XN22	W3WTF4	Uncharacterized protein.	AMP-binding domain-containing protein.	0.454
PFICI_00504	PFICI_11212	W3XN22	W3WTY7	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.454