(38 nodes) Detoxification of Reactive Oxygen Species, and Peroxiredoxin activity network (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10015448	Autophagy-related protein; Vacuolar effluxer which mediate the efflux of amino acids resulting from autophagic degradation. The release of autophagic amino acids allows the maintenance of protein synthesis and viability during nitrogen starvation; Belongs to the ATG22 family. (653 aa)
	FOC1_g10016012	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (184 aa)
	FOC1_g10014882	Thioredoxin M-type, chloroplastic. (186 aa)
	FOC1_g10014987	F-box domain-containing protein. (359 aa)
	FOC1_g10015079	F-box domain-containing protein. (300 aa)
	FOC1_g10004457	Peroxiredoxin-1. (210 aa)
	FOC1_g10015641	Uncharacterized protein. (406 aa)
	FOC1_g10005859	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (196 aa)
	FOC1_g10015768	Sod_Cu domain-containing protein. (263 aa)
	FOC1_g10016136	Thioredoxin reductase. (330 aa)
	FOC1_g10014935	Superoxide dismutase [Cu-Zn]. (215 aa)
	FOC1_g10003427	Protein kinase domain-containing protein. (279 aa)
	FOC1_g10007906	APH domain-containing protein. (373 aa)
	FOC1_g10008019	Thioredoxin reductase. (380 aa)
	FOC1_g10016467	Putative peptide methionine sulfoxide reductase. (205 aa)
	FOC1_g10014889	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (167 aa)
	FOC1_g10010202	Thioredoxin. (142 aa)
	FOC1_g10003655	APH domain-containing protein. (339 aa)
	FOC1_g10007588	Glutaredoxin. (109 aa)
	FOC1_g10005085	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (230 aa)
	FOC1_g10003428	F-box domain-containing protein. (358 aa)
	FOC1_g10007097	DJ-1_PfpI domain-containing protein. (233 aa)
	FOC1_g10007107	DJ-1_PfpI domain-containing protein. (210 aa)
	FOC1_g10006096	F-box domain-containing protein. (347 aa)
	FOC1_g10008288	Uncharacterized protein. (270 aa)
	FOC1_g10008233	Uncharacterized protein. (276 aa)
	FOC1_g10003660	Uncharacterized protein. (344 aa)
	FOC1_g10011743	Uncharacterized protein. (181 aa)
	FOC1_g10014335	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (171 aa)
	FOC1_g10011270	Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. (191 aa)
	FOC1_g10010489	Superoxide dismutase 1 copper chaperone. (248 aa)
	FOC1_g10014266	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (469 aa)
	FOC1_g10007669	Thioredoxin-1. (105 aa)
	FOC1_g10012390	Thioredoxin; Belongs to the thioredoxin family. (105 aa)
	FOC1_g10003223	Thioredoxin. (121 aa)
	FOC1_g10008581	APH domain-containing protein. (380 aa)
	FOC1_g10005519	Uncharacterized protein. (219 aa)
	FOC1_g10003052	F-box domain-containing protein. (597 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10003052	FOC1_g10003427	N4V0K2	N4TSJ9	F-box domain-containing protein.	Protein kinase domain-containing protein.	0.503
FOC1_g10003052	FOC1_g10003428	N4V0K2	N4U741	F-box domain-containing protein.	F-box domain-containing protein.	0.503
FOC1_g10003052	FOC1_g10004457	N4V0K2	N4TKZ7	F-box domain-containing protein.	Peroxiredoxin-1.	0.633
FOC1_g10003052	FOC1_g10005085	N4V0K2	N4U6J0	F-box domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.631
FOC1_g10003052	FOC1_g10005519	N4V0K2	N4UZI7	F-box domain-containing protein.	Uncharacterized protein.	0.503
FOC1_g10003052	FOC1_g10005859	N4V0K2	N4TP35	F-box domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.631
FOC1_g10003052	FOC1_g10006096	N4V0K2	N4U7V0	F-box domain-containing protein.	F-box domain-containing protein.	0.503
FOC1_g10003052	FOC1_g10007097	N4V0K2	N4U7E4	F-box domain-containing protein.	DJ-1_PfpI domain-containing protein.	0.619
FOC1_g10003052	FOC1_g10007107	N4V0K2	N4U7F2	F-box domain-containing protein.	DJ-1_PfpI domain-containing protein.	0.619
FOC1_g10003052	FOC1_g10008233	N4V0K2	N4UBN2	F-box domain-containing protein.	Uncharacterized protein.	0.503
FOC1_g10003052	FOC1_g10008288	N4V0K2	N4U8G1	F-box domain-containing protein.	Uncharacterized protein.	0.503
FOC1_g10003052	FOC1_g10011270	N4V0K2	N4UFD8	F-box domain-containing protein.	Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.	0.473
FOC1_g10003052	FOC1_g10011743	N4V0K2	N4UDD7	F-box domain-containing protein.	Uncharacterized protein.	0.503
FOC1_g10003052	FOC1_g10014266	N4V0K2	N4UI61	F-box domain-containing protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.458
FOC1_g10003052	FOC1_g10014335	N4V0K2	N4UEY4	F-box domain-containing protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.504
FOC1_g10003052	FOC1_g10014935	N4V0K2	N4TRW3	F-box domain-containing protein.	Superoxide dismutase [Cu-Zn].	0.752
FOC1_g10003052	FOC1_g10014987	N4V0K2	N4THK9	F-box domain-containing protein.	F-box domain-containing protein.	0.503
FOC1_g10003052	FOC1_g10015079	N4V0K2	N4THU5	F-box domain-containing protein.	F-box domain-containing protein.	0.503
FOC1_g10003052	FOC1_g10015641	N4V0K2	N4TNU9	F-box domain-containing protein.	Uncharacterized protein.	0.631
FOC1_g10003052	FOC1_g10015768	N4V0K2	N4TP64	F-box domain-containing protein.	Sod_Cu domain-containing protein.	0.752