(57 nodes) Mixed, incl. Glycosaminoglycan degradation, and Raffinose alpha-galactosidase activity network (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10015383	Beta-hexosaminidase. (583 aa)
	FOC1_g10016525	Galactose oxidase. (923 aa)
	FOC1_g10004266	Alpha-galactosidase. (537 aa)
	FOC1_g10006380	Beta-glucosidase 1B; Belongs to the glycosyl hydrolase 1 family. (503 aa)
	FOC1_g10004366	Uncharacterized protein. (429 aa)
	FOC1_g10001576	Alpha-galactosidase. (406 aa)
	FOC1_g10016458	Putative beta-mannosidase B. (855 aa)
	FOC1_g10006862	Endochitinase 2. (804 aa)
	FOC1_g10003449	N-acetylgalactosamine-6-sulfatase. (446 aa)
	FOC1_g10015344	Cellodextrinase A; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (530 aa)
	FOC1_g10008210	Beta-galactosidase. (685 aa)
	FOC1_g10016297	Arylsulfatase. (556 aa)
	FOC1_g10002731	Choline-sulfatase. (464 aa)
	FOC1_g10015269	Endoglucanase C; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (505 aa)
	FOC1_g10004390	Unsaturated rhamnogalacturonyl hydrolase yteR. (358 aa)
	FOC1_g10014807	Putative lipoprotein ybbD. (915 aa)
	FOC1_g10004745	Uncharacterized protein. (378 aa)
	FOC1_g10009306	N-sulfoglucosamine sulfohydrolase. (490 aa)
	FOC1_g10000415	Putative sulfatase PB10D8.02c. (557 aa)
	FOC1_g10004248	Beta-glucosidase 1B; Belongs to the glycosyl hydrolase 1 family. (481 aa)
	FOC1_g10002390	Beta-glucosidase 1B; Belongs to the glycosyl hydrolase 1 family. (491 aa)
	FOC1_g10012161	Galactose oxidase. (660 aa)
	FOC1_g10002609	Unsaturated rhamnogalacturonyl hydrolase yesR. (372 aa)
	FOC1_g10001596	Beta-hexosaminidase. (669 aa)
	FOC1_g10001941	N-sulfoglucosamine sulfohydrolase. (859 aa)
	FOC1_g10005869	Alpha-galactosidase. (409 aa)
	FOC1_g10007405	Alpha-galactosidase; Hydrolyzes a variety of simple alpha-D-galactoside as well as more complex molecules such as oligosaccharides and polysaccharides. Belongs to the glycosyl hydrolase. (744 aa)
	FOC1_g10001695	Beta-hexosaminidase subunit A1. (297 aa)
	FOC1_g10006584	Uncharacterized protein. (273 aa)
	FOC1_g10007050	Putative beta-galactosidase B. (1021 aa)
	FOC1_g10009006	Unsaturated rhamnogalacturonyl hydrolase yteR. (413 aa)
	FOC1_g10002147	Uncharacterized protein. (229 aa)
	FOC1_g10001725	Alpha-galactosidase. (549 aa)
	FOC1_g10004808	Uncharacterized protein. (480 aa)
	FOC1_g10012070	Uncharacterized protein. (387 aa)
	FOC1_g10007061	Beta-galactosidase. (696 aa)
	FOC1_g10004926	Arylsulfatase; Belongs to the sulfatase family. (575 aa)
	FOC1_g10004978	Uncharacterized protein. (485 aa)
	FOC1_g10000595	Putative beta-mannosidase B. (832 aa)
	FOC1_g10005414	Galactose oxidase. (681 aa)
	FOC1_g10003857	Alpha-galactosidase; Hydrolyzes a variety of simple alpha-D-galactoside as well as more complex molecules such as oligosaccharides and polysaccharides. Belongs to the glycosyl hydrolase. (729 aa)
	FOC1_g10001597	Beta-galactosidase. (968 aa)
	FOC1_g10004553	Putative beta-mannosidase B. (846 aa)
	FOC1_g10004569	Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (1024 aa)
	FOC1_g10006071	Unsaturated rhamnogalacturonyl hydrolase yteR. (381 aa)
	FOC1_g10013443	Alpha-galactosidase 2. (713 aa)
	FOC1_g10005071	Arylsulfatase; Belongs to the sulfatase family. (601 aa)
	FOC1_g10013343	Beta-glucosidase 4; Belongs to the glycosyl hydrolase 1 family. (621 aa)
	FOC1_g10006451	Beta-galactosidase. (950 aa)
	FOC1_g10001714	Uncharacterized protein. (551 aa)
	FOC1_g10002451	DUF5597 domain-containing protein. (469 aa)
	FOC1_g10004901	Glucuronoxylanase xynC. (528 aa)
	FOC1_g10003919	Beta-galactosidase. (1004 aa)
	FOC1_g10005412	Beta-galactosidase. (1003 aa)
	FOC1_g10001899	Beta-glucosidase 1B; Belongs to the glycosyl hydrolase 1 family. (453 aa)
	FOC1_g10001919	Beta-glucosidase 1B; Belongs to the glycosyl hydrolase 1 family. (476 aa)
	FOC1_g10001981	Uncharacterized protein. (931 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10000415	FOC1_g10000595	N4U2V4	N4UHL8	Putative sulfatase PB10D8.02c.	Putative beta-mannosidase B.	0.415
FOC1_g10000415	FOC1_g10001597	N4U2V4	N4ULI7	Putative sulfatase PB10D8.02c.	Beta-galactosidase.	0.511
FOC1_g10000415	FOC1_g10002609	N4U2V4	N4U5C6	Putative sulfatase PB10D8.02c.	Unsaturated rhamnogalacturonyl hydrolase yesR.	0.521
FOC1_g10000415	FOC1_g10004390	N4U2V4	N4TY53	Putative sulfatase PB10D8.02c.	Unsaturated rhamnogalacturonyl hydrolase yteR.	0.521
FOC1_g10000415	FOC1_g10004553	N4U2V4	N4ULS4	Putative sulfatase PB10D8.02c.	Putative beta-mannosidase B.	0.415
FOC1_g10000415	FOC1_g10004808	N4U2V4	N4UCZ9	Putative sulfatase PB10D8.02c.	Uncharacterized protein.	0.414
FOC1_g10000415	FOC1_g10006071	N4U2V4	N4UMC9	Putative sulfatase PB10D8.02c.	Unsaturated rhamnogalacturonyl hydrolase yteR.	0.521
FOC1_g10000415	FOC1_g10006451	N4U2V4	N4UTH5	Putative sulfatase PB10D8.02c.	Beta-galactosidase.	0.511
FOC1_g10000415	FOC1_g10007050	N4U2V4	N4UB95	Putative sulfatase PB10D8.02c.	Putative beta-galactosidase B.	0.511
FOC1_g10000415	FOC1_g10007061	N4U2V4	N4UEQ7	Putative sulfatase PB10D8.02c.	Beta-galactosidase.	0.414
FOC1_g10000415	FOC1_g10008210	N4U2V4	N4TTM7	Putative sulfatase PB10D8.02c.	Beta-galactosidase.	0.414
FOC1_g10000415	FOC1_g10009006	N4U2V4	N4UCH0	Putative sulfatase PB10D8.02c.	Unsaturated rhamnogalacturonyl hydrolase yteR.	0.521
FOC1_g10000415	FOC1_g10016458	N4U2V4	N4TR04	Putative sulfatase PB10D8.02c.	Putative beta-mannosidase B.	0.415
FOC1_g10000595	FOC1_g10000415	N4UHL8	N4U2V4	Putative beta-mannosidase B.	Putative sulfatase PB10D8.02c.	0.415
FOC1_g10000595	FOC1_g10001597	N4UHL8	N4ULI7	Putative beta-mannosidase B.	Beta-galactosidase.	0.434
FOC1_g10000595	FOC1_g10001714	N4UHL8	N4UU85	Putative beta-mannosidase B.	Uncharacterized protein.	0.434
FOC1_g10000595	FOC1_g10001941	N4UHL8	N4U8K3	Putative beta-mannosidase B.	N-sulfoglucosamine sulfohydrolase.	0.415
FOC1_g10000595	FOC1_g10001981	N4UHL8	N4V476	Putative beta-mannosidase B.	Uncharacterized protein.	0.434
FOC1_g10000595	FOC1_g10002451	N4UHL8	N4UUC0	Putative beta-mannosidase B.	DUF5597 domain-containing protein.	0.434
FOC1_g10000595	FOC1_g10003449	N4UHL8	N4TSL6	Putative beta-mannosidase B.	N-acetylgalactosamine-6-sulfatase.	0.415