36 items (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10015720	Peroxisomal membrane protein 4. (227 aa)
	FOC1_g10016063	Peroxisomal membrane protein PMP47B; Belongs to the mitochondrial carrier (TC 2.A.29) family. (346 aa)
	FOC1_g10006370	Peroxisomal membrane protein PMP27. (224 aa)
	FOC1_g10015533	Uncharacterized protein. (219 aa)
	FOC1_g10013894	Peroxisomal biogenesis factor 3. (538 aa)
	FOC1_g10016373	Protein SYM1; Belongs to the peroxisomal membrane protein PXMP2/4 family. (175 aa)
	FOC1_g10000412	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family. (203 aa)
	FOC1_g10015233	Uncharacterized protein. (314 aa)
	FOC1_g10016100	Putative mitochondrial carnitine O-acetyltransferase. (859 aa)
	FOC1_g10006678	Carnitine O-acetyltransferase, mitochondrial; Belongs to the carnitine/choline acetyltransferase family. (609 aa)
	FOC1_g10006688	Protein MSP1; Belongs to the AAA ATPase family. (408 aa)
	FOC1_g10014974	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (215 aa)
	FOC1_g10014485	ATP-binding cassette sub-family D member 1. (709 aa)
	FOC1_g10000078	Uncharacterized protein. (371 aa)
	FOC1_g10012934	Peroxisomal biogenesis factor 19. (440 aa)
	FOC1_g10011725	Putative lysosomal cobalamin transporter. (595 aa)
	FOC1_g10009424	Succinate/fumarate mitochondrial transporter; Belongs to the mitochondrial carrier (TC 2.A.29) family. (346 aa)
	FOC1_g10003322	Lipase. (607 aa)
	FOC1_g10007037	Protein SYM1; Belongs to the peroxisomal membrane protein PXMP2/4 family. (210 aa)
	FOC1_g10002279	Uncharacterized protein. (167 aa)
	FOC1_g10000587	Protein SYM1; Belongs to the peroxisomal membrane protein PXMP2/4 family. (153 aa)
	FOC1_g10006864	Acyl-coenzyme A thioesterase 8. (353 aa)
	FOC1_g10003403	Protein sym1; Belongs to the peroxisomal membrane protein PXMP2/4 family. (223 aa)
	FOC1_g10014216	Acyl-CoA-binding protein like protein 3. (294 aa)
	FOC1_g10008558	Peroxisomal adenine nucleotide transporter 1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (329 aa)
	FOC1_g10013180	Peroxisomal long-chain fatty acid import protein 2. (810 aa)
	FOC1_g10008539	Peroxisomal adenine nucleotide transporter 1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (340 aa)
	FOC1_g10008922	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family. (207 aa)
	FOC1_g10002753	PXMP2/4 family protein 4; Belongs to the peroxisomal membrane protein PXMP2/4 family. (249 aa)
	FOC1_g10012482	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family. (211 aa)
	FOC1_g10003749	Putative 31.7 kDa protein in traX-finO intergenic region. (316 aa)
	FOC1_g10002536	Peroxisomal membrane protein PEX16. (375 aa)
	FOC1_g10011983	Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family. (342 aa)
	FOC1_g10002349	Acyl-coenzyme A thioesterase 8. (359 aa)
	FOC1_g10007767	Acyl-coenzyme A thioesterase 8. (64 aa)
	FOC1_g10011135	Mitochondrial carnitine carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family. (336 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10000078	FOC1_g10002279	N4U0Q7	N4U9F7	Uncharacterized protein.	Uncharacterized protein.	0.411
FOC1_g10000078	FOC1_g10002536	N4U0Q7	N4UJX4	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.595
FOC1_g10000078	FOC1_g10003403	N4U0Q7	N4UAE3	Uncharacterized protein.	Protein sym1; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.794
FOC1_g10000078	FOC1_g10006370	N4U0Q7	N4TJT8	Uncharacterized protein.	Peroxisomal membrane protein PMP27.	0.411
FOC1_g10000078	FOC1_g10009424	N4U0Q7	N4U414	Uncharacterized protein.	Succinate/fumarate mitochondrial transporter; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.568
FOC1_g10000078	FOC1_g10012934	N4U0Q7	N4U1M4	Uncharacterized protein.	Peroxisomal biogenesis factor 19.	0.715
FOC1_g10000078	FOC1_g10013180	N4U0Q7	N4UBE7	Uncharacterized protein.	Peroxisomal long-chain fatty acid import protein 2.	0.435
FOC1_g10000078	FOC1_g10013894	N4U0Q7	N4TPF1	Uncharacterized protein.	Peroxisomal biogenesis factor 3.	0.599
FOC1_g10000078	FOC1_g10014485	N4U0Q7	N4U0K5	Uncharacterized protein.	ATP-binding cassette sub-family D member 1.	0.435
FOC1_g10000078	FOC1_g10015233	N4U0Q7	N4TX74	Uncharacterized protein.	Uncharacterized protein.	0.411
FOC1_g10000078	FOC1_g10015720	N4U0Q7	N4TEM4	Uncharacterized protein.	Peroxisomal membrane protein 4.	0.485
FOC1_g10000412	FOC1_g10002279	N4TSD6	N4U9F7	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Uncharacterized protein.	0.411
FOC1_g10000412	FOC1_g10002536	N4TSD6	N4UJX4	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal membrane protein PEX16.	0.595
FOC1_g10000412	FOC1_g10006370	N4TSD6	N4TJT8	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal membrane protein PMP27.	0.411
FOC1_g10000412	FOC1_g10012934	N4TSD6	N4U1M4	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal biogenesis factor 19.	0.732
FOC1_g10000412	FOC1_g10013180	N4TSD6	N4UBE7	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal long-chain fatty acid import protein 2.	0.435
FOC1_g10000412	FOC1_g10013894	N4TSD6	N4TPF1	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal biogenesis factor 3.	0.599
FOC1_g10000412	FOC1_g10014485	N4TSD6	N4U0K5	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	ATP-binding cassette sub-family D member 1.	0.435
FOC1_g10000412	FOC1_g10015233	N4TSD6	N4TX74	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Uncharacterized protein.	0.411
FOC1_g10000412	FOC1_g10015720	N4TSD6	N4TEM4	PXMP2/4 family protein 3; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal membrane protein 4.	0.485