(30 nodes) Mixed, incl. Zinc finger, GATA-type, and Fertilization network (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10015367	Transcriptional regulator NRG1. (306 aa)
	FOC1_g10015627	Uncharacterized protein. (6825 aa)
	FOC1_g10009208	Uncharacterized protein. (485 aa)
	FOC1_g10012778	GATA zinc finger domain-containing protein 10. (477 aa)
	FOC1_g10014910	Uncharacterized protein. (366 aa)
	FOC1_g10005218	Uncharacterized protein; Belongs to the complex I LYR family. (400 aa)
	FOC1_g10015283	Uncharacterized protein. (352 aa)
	FOC1_g10014843	Nitrogen regulatory protein areA. (911 aa)
	FOC1_g10014908	Pheromone receptor transcription factor. (222 aa)
	FOC1_g10002208	Zinc finger protein MSN4. (352 aa)
	FOC1_g10016442	Forkhead box protein O4. (614 aa)
	FOC1_g10013748	Homeobox-leucine zipper protein ROC3. (452 aa)
	FOC1_g10005943	Nutrient and stress factor 1. (718 aa)
	FOC1_g10004736	Uncharacterized protein. (281 aa)
	FOC1_g10004857	GATA zinc finger domain-containing protein 7. (63 aa)
	FOC1_g10013896	Forkhead protein sep1. (763 aa)
	FOC1_g10000861	GATA zinc finger domain-containing protein 15. (360 aa)
	FOC1_h10017579	MULE domain-containing protein. (52 aa)
	FOC1_g10007158	Uncharacterized protein. (307 aa)
	FOC1_g10001246	Homeobox-leucine zipper protein ROC8. (254 aa)
	FOC1_g10010839	Protein FMP21, mitochondrial. (130 aa)
	FOC1_g10012311	Clock-controlled protein 8. (512 aa)
	FOC1_g10013051	MKL/myocardin-like protein 2. (119 aa)
	FOC1_g10008550	Fork head protein like protein 1. (617 aa)
	FOC1_g10011205	Siderophore biosynthesis regulatory protein URBS1. (555 aa)
	FOC1_g10009529	Ribosomal protein arginine N-methytransferase rmt3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (475 aa)
	FOC1_g10009567	Uncharacterized protein. (522 aa)
	FOC1_g10005398	Goodbye domain-containing protein. (1174 aa)
	FOC1_g10009887	Uncharacterized protein. (386 aa)
	FOC1_g10005397	GATA zinc finger domain-containing protein 10. (210 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10000861	FOC1_g10001246	N4U9V2	N4UCP2	GATA zinc finger domain-containing protein 15.	Homeobox-leucine zipper protein ROC8.	0.463
FOC1_g10000861	FOC1_g10005218	N4U9V2	N4TS96	GATA zinc finger domain-containing protein 15.	Uncharacterized protein; Belongs to the complex I LYR family.	0.463
FOC1_g10000861	FOC1_g10005943	N4U9V2	N4U122	GATA zinc finger domain-containing protein 15.	Nutrient and stress factor 1.	0.404
FOC1_g10000861	FOC1_g10007158	N4U9V2	N4UBL1	GATA zinc finger domain-containing protein 15.	Uncharacterized protein.	0.463
FOC1_g10000861	FOC1_g10009208	N4U9V2	N4TIM5	GATA zinc finger domain-containing protein 15.	Uncharacterized protein.	0.463
FOC1_g10000861	FOC1_g10009529	N4U9V2	N4UVJ2	GATA zinc finger domain-containing protein 15.	Ribosomal protein arginine N-methytransferase rmt3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.600
FOC1_g10000861	FOC1_g10013748	N4U9V2	N4TZ60	GATA zinc finger domain-containing protein 15.	Homeobox-leucine zipper protein ROC3.	0.463
FOC1_g10000861	FOC1_g10014908	N4U9V2	N4TWD4	GATA zinc finger domain-containing protein 15.	Pheromone receptor transcription factor.	0.722
FOC1_g10000861	FOC1_g10014910	N4U9V2	N4TRT8	GATA zinc finger domain-containing protein 15.	Uncharacterized protein.	0.400
FOC1_g10000861	FOC1_g10015283	N4U9V2	N4TSQ6	GATA zinc finger domain-containing protein 15.	Uncharacterized protein.	0.463
FOC1_g10000861	FOC1_g10015367	N4U9V2	N4TDS8	GATA zinc finger domain-containing protein 15.	Transcriptional regulator NRG1.	0.449
FOC1_g10000861	FOC1_g10015627	N4U9V2	N4TED3	GATA zinc finger domain-containing protein 15.	Uncharacterized protein.	0.463
FOC1_g10001246	FOC1_g10000861	N4UCP2	N4U9V2	Homeobox-leucine zipper protein ROC8.	GATA zinc finger domain-containing protein 15.	0.463
FOC1_g10001246	FOC1_g10004857	N4UCP2	N4U287	Homeobox-leucine zipper protein ROC8.	GATA zinc finger domain-containing protein 7.	0.463
FOC1_g10001246	FOC1_g10005397	N4UCP2	N4V308	Homeobox-leucine zipper protein ROC8.	GATA zinc finger domain-containing protein 10.	0.463
FOC1_g10001246	FOC1_g10005398	N4UCP2	N4UVX1	Homeobox-leucine zipper protein ROC8.	Goodbye domain-containing protein.	0.463
FOC1_g10001246	FOC1_g10010839	N4UCP2	N4UFI7	Homeobox-leucine zipper protein ROC8.	Protein FMP21, mitochondrial.	0.461
FOC1_g10001246	FOC1_g10011205	N4UCP2	N4UUS2	Homeobox-leucine zipper protein ROC8.	Siderophore biosynthesis regulatory protein URBS1.	0.577
FOC1_g10001246	FOC1_g10012311	N4UCP2	N4UNI2	Homeobox-leucine zipper protein ROC8.	Clock-controlled protein 8.	0.463
FOC1_g10001246	FOC1_g10012778	N4UCP2	N4TIX6	Homeobox-leucine zipper protein ROC8.	GATA zinc finger domain-containing protein 10.	0.463