10 items (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10016088	Putative metabolite transport protein yfiG; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (653 aa)
	FOC1_g10005350	Putative polyol transporter 2; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (594 aa)
	FOC1_g10001235	Beta-lactamase domain-containing protein. (115 aa)
	FOC1_g10012856	Uncharacterized protein. (352 aa)
	FOC1_g10003463	Polyol transporter 5; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (618 aa)
	FOC1_g10006808	Protein vip1. (278 aa)
	FOC1_g10001569	Beta-lactamase. (333 aa)
	FOC1_g10013075	Uncharacterized protein. (600 aa)
	FOC1_g10010772	Putative metabolite transport protein ywtG; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (655 aa)
	FOC1_g10014411	Uncharacterized protein. (126 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10003463	FOC1_g10012856	N4U349	N4TY70	Polyol transporter 5; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.453
FOC1_g10003463	FOC1_g10013075	N4U349	N4UB18	Polyol transporter 5; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.430
FOC1_g10005350	FOC1_g10012856	N4TWC4	N4TY70	Putative polyol transporter 2; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.453
FOC1_g10005350	FOC1_g10013075	N4TWC4	N4UB18	Putative polyol transporter 2; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.430
FOC1_g10006808	FOC1_g10012856	N4U636	N4TY70	Protein vip1.	Uncharacterized protein.	0.720
FOC1_g10006808	FOC1_g10013075	N4U636	N4UB18	Protein vip1.	Uncharacterized protein.	0.780
FOC1_g10006808	FOC1_g10014411	N4U636	N4UIK0	Protein vip1.	Uncharacterized protein.	0.413
FOC1_g10010772	FOC1_g10012856	N4UBZ4	N4TY70	Putative metabolite transport protein ywtG; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.453
FOC1_g10010772	FOC1_g10013075	N4UBZ4	N4UB18	Putative metabolite transport protein ywtG; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.430
FOC1_g10012856	FOC1_g10003463	N4TY70	N4U349	Uncharacterized protein.	Polyol transporter 5; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.453
FOC1_g10012856	FOC1_g10005350	N4TY70	N4TWC4	Uncharacterized protein.	Putative polyol transporter 2; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.453
FOC1_g10012856	FOC1_g10006808	N4TY70	N4U636	Uncharacterized protein.	Protein vip1.	0.720
FOC1_g10012856	FOC1_g10010772	N4TY70	N4UBZ4	Uncharacterized protein.	Putative metabolite transport protein ywtG; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.453
FOC1_g10012856	FOC1_g10013075	N4TY70	N4UB18	Uncharacterized protein.	Uncharacterized protein.	0.689
FOC1_g10012856	FOC1_g10014411	N4TY70	N4UIK0	Uncharacterized protein.	Uncharacterized protein.	0.468
FOC1_g10012856	FOC1_g10016088	N4TY70	N4TFI6	Uncharacterized protein.	Putative metabolite transport protein yfiG; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.453
FOC1_g10013075	FOC1_g10003463	N4UB18	N4U349	Uncharacterized protein.	Polyol transporter 5; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.430
FOC1_g10013075	FOC1_g10005350	N4UB18	N4TWC4	Uncharacterized protein.	Putative polyol transporter 2; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.430
FOC1_g10013075	FOC1_g10006808	N4UB18	N4U636	Uncharacterized protein.	Protein vip1.	0.780
FOC1_g10013075	FOC1_g10010772	N4UB18	N4UBZ4	Uncharacterized protein.	Putative metabolite transport protein ywtG; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.430