10 items (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_h10017476	Uncharacterized protein. (854 aa)
	FOC1_g10014462	Septin like protein spn2; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (338 aa)
	FOC1_g10010995	Axial budding pattern protein 2. (903 aa)
	FOC1_g10014922	Septin-14; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (522 aa)
	FOC1_g10012091	Septin like protein spn3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (383 aa)
	FOC1_g10013556	Protein BNI4. (746 aa)
	FOC1_g10010693	CBL-interacting serine/threonine-protein kinase 21. (350 aa)
	FOC1_g10011083	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (518 aa)
	FOC1_g10008616	Cell division control protein 42 like protein. (195 aa)
	FOC1_g10008554	Septin-7; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (632 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10008554	FOC1_g10013556	N4UD01	N4U658	Septin-7; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Protein BNI4.	0.458
FOC1_g10008554	FOC1_g10014462	N4UD01	N4UBC5	Septin-7; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin like protein spn2; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.945
FOC1_g10008554	FOC1_g10014922	N4UD01	N4THD7	Septin-7; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin-14; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.955
FOC1_g10008616	FOC1_g10010995	N4USQ6	N4U8F1	Cell division control protein 42 like protein.	Axial budding pattern protein 2.	0.501
FOC1_g10008616	FOC1_g10011083	N4USQ6	N4UYC0	Cell division control protein 42 like protein.	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.556
FOC1_g10008616	FOC1_g10012091	N4USQ6	N4U1L2	Cell division control protein 42 like protein.	Septin like protein spn3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.422
FOC1_g10008616	FOC1_g10013556	N4USQ6	N4U658	Cell division control protein 42 like protein.	Protein BNI4.	0.550
FOC1_g10008616	FOC1_g10014462	N4USQ6	N4UBC5	Cell division control protein 42 like protein.	Septin like protein spn2; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.436
FOC1_g10010693	FOC1_g10011083	N4U7N4	N4UYC0	CBL-interacting serine/threonine-protein kinase 21.	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.742
FOC1_g10010693	FOC1_g10012091	N4U7N4	N4U1L2	CBL-interacting serine/threonine-protein kinase 21.	Septin like protein spn3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.615
FOC1_g10010693	FOC1_g10013556	N4U7N4	N4U658	CBL-interacting serine/threonine-protein kinase 21.	Protein BNI4.	0.462
FOC1_g10010693	FOC1_g10014462	N4U7N4	N4UBC5	CBL-interacting serine/threonine-protein kinase 21.	Septin like protein spn2; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.650
FOC1_g10010995	FOC1_g10008616	N4U8F1	N4USQ6	Axial budding pattern protein 2.	Cell division control protein 42 like protein.	0.501
FOC1_g10011083	FOC1_g10008616	N4UYC0	N4USQ6	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Cell division control protein 42 like protein.	0.556
FOC1_g10011083	FOC1_g10010693	N4UYC0	N4U7N4	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	CBL-interacting serine/threonine-protein kinase 21.	0.742
FOC1_g10011083	FOC1_g10012091	N4UYC0	N4U1L2	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin like protein spn3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.945
FOC1_g10011083	FOC1_g10013556	N4UYC0	N4U658	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Protein BNI4.	0.565
FOC1_g10011083	FOC1_g10014462	N4UYC0	N4UBC5	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin like protein spn2; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.965
FOC1_g10011083	FOC1_g10014922	N4UYC0	N4THD7	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin-14; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.955
FOC1_g10012091	FOC1_g10008616	N4U1L2	N4USQ6	Septin like protein spn3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Cell division control protein 42 like protein.	0.422