STRINGSTRING
FOC1_g10007528 FOC1_g10007528 FOC1_g10015412 FOC1_g10015412 FOC1_g10015672 FOC1_g10015672 FOC1_g10015904 FOC1_g10015904 FOC1_g10016052 FOC1_g10016052 FOC1_g10015408 FOC1_g10015408 NCS6 NCS6 FOC1_g10014876 FOC1_g10014876 FOC1_g10014881 FOC1_g10014881 ALA1 ALA1 FOC1_g10012666 FOC1_g10012666 NAT10 NAT10 FOC1_g10016563 FOC1_g10016563 FOC1_g10014761 FOC1_g10014761 FOC1_g10014857 FOC1_g10014857 FOC1_g10014887 FOC1_g10014887 FOC1_g10009081 FOC1_g10009081 FOC1_g10012697 FOC1_g10012697 FOC1_g10012788 FOC1_g10012788 FOC1_g10009107 FOC1_g10009107 FOC1_g10013800 FOC1_g10013800 FOC1_g10013831 FOC1_g10013831 FOC1_g10005763 FOC1_g10005763 FOC1_g10013730 FOC1_g10013730 FOC1_g10013873 FOC1_g10013873 FOC1_g10016111 FOC1_g10016111 FOC1_g10003464 FOC1_g10003464 FOC1_g10006934 FOC1_g10006934 FOC1_g10015005 FOC1_g10015005 FOC1_g10015846 FOC1_g10015846 FOC1_g10015866 FOC1_g10015866 FOC1_g10016189 FOC1_g10016189 FOC1_g10016292 FOC1_g10016292 uba4 uba4 FOC1_g10010941 FOC1_g10010941 FOC1_g10000135 FOC1_g10000135 TSR3 TSR3 FOC1_g10014247 FOC1_g10014247 FOC1_g10002012 FOC1_g10002012 FOC1_g10003805 FOC1_g10003805 FOC1_g10010264 FOC1_g10010264 FOC1_g10010274 FOC1_g10010274 FOC1_g10015107 FOC1_g10015107 FOC1_g10001319 FOC1_g10001319 FOC1_g10010147 FOC1_g10010147 FOC1_g10013005 FOC1_g10013005 FOC1_g10009448 FOC1_g10009448 FOC1_g10006624 FOC1_g10006624 FOC1_g10000807 FOC1_g10000807 FOC1_g10004081 FOC1_g10004081 FOC1_g10005226 FOC1_g10005226 FOC1_g10013555 FOC1_g10013555 FOC1_g10013640 FOC1_g10013640 FOC1_g10011961 FOC1_g10011961 FOC1_g10013711 FOC1_g10013711 FOC1_g10009294 FOC1_g10009294 FOC1_g10013900 FOC1_g10013900 FOC1_g10007968 FOC1_g10007968 FOC1_g10002174 FOC1_g10002174 FOC1_g10005847 FOC1_g10005847 FOC1_g10012525 FOC1_g10012525 FOC1_g10005166 FOC1_g10005166 TRM82 TRM82 FOC1_g10002764 FOC1_g10002764 FOC1_g10003423 FOC1_g10003423 FOC1_g10002264 FOC1_g10002264 FOC1_g10013139 FOC1_g10013139 FOC1_g10013260 FOC1_g10013260 FOC1_g10014090 FOC1_g10014090 FOC1_g10014210 FOC1_g10014210 FOC1_g10009694 FOC1_g10009694 FOC1_g10013019 FOC1_g10013019 FOC1_g10014327 FOC1_g10014327 FOC1_g10009744 FOC1_g10009744 FOC1_g10014535 FOC1_g10014535 FOC1_g10008709 FOC1_g10008709 FOC1_g10008981 FOC1_g10008981 FOC1_g10010249 FOC1_g10010249 FOC1_g10010993 FOC1_g10010993 FOC1_g10010299 FOC1_g10010299 FOC1_g10008740 FOC1_g10008740 FOC1_g10002267 FOC1_g10002267 FOC1_g10014031 FOC1_g10014031 FOC1_g10014051 FOC1_g10014051 FOC1_g10014108 FOC1_g10014108 FOC1_g10007264 FOC1_g10007264 FOC1_g10009858 FOC1_g10009858 FOC1_g10014486 FOC1_g10014486 FOC1_g10010773 FOC1_g10010773 FOC1_g10014538 FOC1_g10014538 FOC1_g10010058 FOC1_g10010058 FOC1_g10010099 FOC1_g10010099 FOC1_g10007275 FOC1_g10007275 FOC1_g10012245 FOC1_g10012245 FOC1_g10005369 FOC1_g10005369 FOC1_g10002263 FOC1_g10002263 FOC1_g10014073 FOC1_g10014073 FOC1_g10014240 FOC1_g10014240 FOC1_g10002469 FOC1_g10002469 FOC1_g10014312 FOC1_g10014312 FOC1_g10014466 FOC1_g10014466 AIM41 AIM41 FOC1_g10012099 FOC1_g10012099 FOC1_g10008438 FOC1_g10008438 FOC1_g10013113 FOC1_g10013113 FOC1_g10012354 FOC1_g10012354 FOC1_g10009668 FOC1_g10009668 FOC1_g10000035 FOC1_g10000035 FOC1_g10008528 FOC1_g10008528 FOC1_g10001429 FOC1_g10001429 FOC1_g10009561 FOC1_g10009561 NCS2 NCS2 FOC1_g10009982 FOC1_g10009982 FOC1_g10000034 FOC1_g10000034 FOC1_g10010075 FOC1_g10010075 FOC1_g10008796 FOC1_g10008796 FOC1_g10003555 FOC1_g10003555 FOC1_g10010506 FOC1_g10010506 FOC1_g10010567 FOC1_g10010567 FOC1_g10010654 FOC1_g10010654 FOC1_g10004975 FOC1_g10004975 FOC1_g10001975 FOC1_g10001975
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FOC1_g10007528NADH-cytochrome b5 reductase 1. (450 aa)
FOC1_g10015412tRNA (Guanine-N(1)-)-methyltransferase. (463 aa)
FOC1_g10015672Uncharacterized protein. (300 aa)
FOC1_g10015904Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (974 aa)
FOC1_g10016052Methyltransf_11 domain-containing protein. (300 aa)
FOC1_g10015408tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family. (388 aa)
NCS6Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation. (388 aa)
FOC1_g10014876Uncharacterized protein. (299 aa)
FOC1_g10014881Uncharacterized protein. (267 aa)
ALA1Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (959 aa)
FOC1_g10012666rRNA methyltransferase 1, mitochondrial. (689 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1066 aa)
FOC1_g10016563tRNA dimethylallyltransferase, mitochondrial. (178 aa)
FOC1_g10014761mRNA cap guanine-N7 methyltransferase. (477 aa)
FOC1_g10014857Modification methylase HphIA; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (528 aa)
FOC1_g10014887tRNA-specific adenosine deaminase 1. (413 aa)
FOC1_g10009081BTB domain-containing protein. (293 aa)
FOC1_g10012697Methionyl-tRNA formyltransferase, mitochondrial. (300 aa)
FOC1_g10012788Uncharacterized protein. (357 aa)
FOC1_g10009107Putative methyltransferase BUD23. (280 aa)
FOC1_g10013800tRNA-dihydrouridine synthase 2. (420 aa)
FOC1_g10013831tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance. (451 aa)
FOC1_g10005763tRNA (Adenine-N(1)-)-methyltransferase TrmI. (436 aa)
FOC1_g10013730Uncharacterized protein. (504 aa)
FOC1_g10013873Uncharacterized protein. (1481 aa)
FOC1_g10016111Regulator of Ty1 transposition protein 10. (987 aa)
FOC1_g10003464Methyltransf_25 domain-containing protein. (285 aa)
FOC1_g10006934tRNA wybutosine-synthesizing protein 2/3/4. (310 aa)
FOC1_g10015005Bifunctional protein RIB2. (167 aa)
FOC1_g10015846Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (431 aa)
FOC1_g10015866Uncharacterized protein. (756 aa)
FOC1_g10016189tRNA(His) guanylyltransferase; Adds a GMP to the 5'-end of tRNA(His) after transcription and RNase P cleavage. (288 aa)
FOC1_g10016292tRNA-dihydrouridine synthase 3. (748 aa)
uba4Adenylyltransferase and sulfurtransferase uba4; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers urm1 and MOCS2A. Its N-terminus first activates urm1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to urm1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...] (448 aa)
FOC1_g10010941H/ACA ribonucleoprotein complex subunit 2. (241 aa)
FOC1_g10000135Alanyl-tRNA synthetase. (261 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (398 aa)
FOC1_g10014247Elongator complex protein 5. (343 aa)
FOC1_g10002012tRNA guanosine-2'-O-methyltransferase trm11. (379 aa)
FOC1_g10003805Uncharacterized protein. (405 aa)
FOC1_g10010264Uncharacterized protein. (462 aa)
FOC1_g10010274Uncharacterized protein; Belongs to the MT-A70-like family. (337 aa)
FOC1_g10015107Protein roadkill. (280 aa)
FOC1_g10001319Uncharacterized protein. (146 aa)
FOC1_g10010147tRNA (guanine(26)-N(2))-dimethyltransferase. (626 aa)
FOC1_g10013005Ribosomal RNA methyltransferase MRM2, mitochondrial. (301 aa)
FOC1_g10009448tRNA pseudouridine synthase 1. (604 aa)
FOC1_g10006624rRNA 2'-O-methyltransferase fibrillarin. (319 aa)
FOC1_g10000807Uncharacterized protein. (58 aa)
FOC1_g10004081Methyltransf_25 domain-containing protein. (253 aa)
FOC1_g10005226Alpha-ketoglutarate-dependent dioxygenase alkB. (346 aa)
FOC1_g10013555tRNA-dihydrouridine synthase 1. (508 aa)
FOC1_g10013640Multisubstrate pseudouridine synthase 7. (741 aa)
FOC1_g10011961Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs. (375 aa)
FOC1_g10013711Putative methyltransferase C2C4.06c; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (601 aa)
FOC1_g10009294BTB domain-containing protein. (306 aa)
FOC1_g10013900NADH-cytochrome b5 reductase 1. (423 aa)
FOC1_g10007968Dextranase. (600 aa)
FOC1_g10002174Uncharacterized protein. (687 aa)
FOC1_g10005847Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (572 aa)
FOC1_g10012525Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] (424 aa)
FOC1_g10005166tRNA wybutosine-synthesizing protein 1. (774 aa)
TRM82tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family. (546 aa)
FOC1_g10002764rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (594 aa)
FOC1_g10003423YrdC-like domain-containing protein. (257 aa)
FOC1_g10002264Kelch repeat and BTB domain-containing protein 1. (287 aa)
FOC1_g10013139Thiosulfate sulfurtransferase TUM1. (338 aa)
FOC1_g10013260tRNA (Adenine-N(1)-)-methyltransferase non-catalytic subunit trm6. (574 aa)
FOC1_g10014090HAD_SAK_1 domain-containing protein. (573 aa)
FOC1_g10014210Putative ribosomal RNA methyltransferase Nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (679 aa)
FOC1_g10009694tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (542 aa)
FOC1_g10013019Putative small nuclear ribonucleoprotein F. (89 aa)
FOC1_g10014327tRNA A64-2'-O-ribosylphosphate transferase. (453 aa)
FOC1_g10009744Nucleolar protein 58. (593 aa)
FOC1_g10014535rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (343 aa)
FOC1_g10008709Protein kti12. (374 aa)
FOC1_g10008981NADH-cytochrome b5 reductase 1. (452 aa)
FOC1_g10010249H/ACA ribonucleoprotein complex non-core subunit NAF1. (560 aa)
FOC1_g10010993Allergen Asp f 7. (271 aa)
FOC1_g10010299Trans-aconitate 2-methyltransferase. (326 aa)
FOC1_g10008740DUF2431 domain-containing protein. (342 aa)
FOC1_g10002267Uncharacterized protein. (447 aa)
FOC1_g10014031Ribosomal RNA small subunit methyltransferase NEP1. (259 aa)
FOC1_g10014051THUMP domain-containing protein. (329 aa)
FOC1_g10014108tRNA (Guanine-N(1)-)-methyltransferase. (411 aa)
FOC1_g10007264Putative tRNA(Ile)-lysidine synthase. (675 aa)
FOC1_g10009858Adenylate isopentenyltransferase 4. (289 aa)
FOC1_g10014486Diphthamide biosynthesis protein 3. (86 aa)
FOC1_g10010773Uncharacterized protein. (545 aa)
FOC1_g10014538tRNA (Adenine-N(1)-)-methyltransferase catalytic subunit trm61. (502 aa)
FOC1_g1001005825S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. (291 aa)
FOC1_g10010099Multisite-specific tRNA:(Cytosine-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (859 aa)
FOC1_g10007275Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family. (1297 aa)
FOC1_g10012245H/ACA ribonucleoprotein complex subunit 3. (66 aa)
FOC1_g10005369Uncharacterized protein. (731 aa)
FOC1_g10002263BTB domain-containing protein. (239 aa)
FOC1_g10014073H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (210 aa)
FOC1_g10014240tRNA modification GTPase MSS1, mitochondrial. (544 aa)
FOC1_g10002469Uncharacterized protein. (598 aa)
FOC1_g10014312PPPDE peptidase domain-containing protein 2. (581 aa)
FOC1_g10014466Queuosine salvage protein; Involved in salvaging queuosine. (365 aa)
AIM41Altered inheritance of mitochondria protein 41. (196 aa)
FOC1_g10012099ThiF domain-containing protein. (477 aa)
FOC1_g10008438tRNA (Uracil-O(2)-)-methyltransferase. (511 aa)
FOC1_g10013113tRNA wybutosine-synthesizing protein 2; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Catalyzes the transfer of the alpha-amino-alpha-carboxypropyl (acp) group from S- adenosyl-L-methionine to the C-7 position of 4-demethylwyosine (imG-14) to produce wybutosine-86. (378 aa)
FOC1_g10012354tRNA dimethylallyltransferase, mitochondrial. (360 aa)
FOC1_g10009668tRNA pseudouridine synthase 3. (546 aa)
FOC1_g10000035Allergen Asp f 7. (235 aa)
FOC1_g10008528tRNA-specific adenosine deaminase 2. (512 aa)
FOC1_g10001429Protein roadkill. (239 aa)
FOC1_g10009561Uncharacterized protein. (354 aa)
NCS2Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation. (389 aa)
FOC1_g10009982PseudoU_synth_2 domain-containing protein. (514 aa)
FOC1_g10000034Allergen Asp f 7. (235 aa)
FOC1_g10010075tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG. (1183 aa)
FOC1_g10008796Alanyl-tRNA editing protein AlaX-L. (257 aa)
FOC1_g10003555HD_domain domain-containing protein. (500 aa)
FOC1_g10010506RCC1 repeat-containing protein C10F6.04. (362 aa)
FOC1_g10010567U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; Belongs to the methyltransferase superfamily. METTL16/RlmF family. (465 aa)
FOC1_g10010654Elongator complex protein 4. (378 aa)
FOC1_g10004975SGNH_hydro domain-containing protein. (406 aa)
FOC1_g10001975SGNH_hydro domain-containing protein. (378 aa)
Your Current Organism:
Fusarium oxysporum f. sp. cubense race 1
NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1
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