30 items (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10005930	Chitin synthase regulatory factor 4. (866 aa)
	FOC1_g10010511	Chitin synthase 8. (771 aa)
	FOC1_g10004966	Putative glucan 1,3-beta-glucosidase A; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (391 aa)
	FOC1_g10008582	Putative PH domain-containing protein PB16A4.02c. (396 aa)
	FOC1_g10013234	Protein alcS. (289 aa)
	FOC1_g10009406	Chitin synthase 6. (663 aa)
	FOC1_g10010194	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1149 aa)
	FOC1_g10003310	Protein alcS. (278 aa)
	FOC1_g10004136	Chitin synthase 6. (730 aa)
	FOC1_g10003633	Chitin synthase; Plays a major role in cell wall biogenesis. (955 aa)
	FOC1_g10010918	Chitin synthase; Plays a major role in cell wall biogenesis. (903 aa)
	FOC1_g10008128	Uncharacterized protein. (176 aa)
	FOC1_g10013135	Arrestin_C domain-containing protein. (403 aa)
	FOC1_g10004555	N-acetylglucosaminyltransferase. (481 aa)
	FOC1_g10005817	Flavin_Reduct domain-containing protein. (270 aa)
	FOC1_g10007821	Protein alcS. (276 aa)
	FOC1_g10008129	Universal stress protein A family protein C25B2.10. (553 aa)
	FOC1_g10005818	Heat shock protein 90 like protein. (700 aa)
	FOC1_g10012026	Protein zds1. (897 aa)
	FOC1_g10012728	Chitin synthase 1; Belongs to the ubiquitin-conjugating enzyme family. (1091 aa)
	FOC1_g10006724	Chitin synthase 8; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1862 aa)
	FOC1_g10006708	Chitin synthase D. (739 aa)
	FOC1_g10010739	Rho guanine nucleotide exchange factor scd1. (962 aa)
	FOC1_g10008163	Chitin synthase 2. (1182 aa)
	FOC1_g10002414	Putative glucan 1,3-beta-glucosidase A; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (437 aa)
	FOC1_g10006723	Chitin synthase 6. (1765 aa)
	FOC1_g10006677	Adenylyl cyclase-associated protein; Belongs to the CAP family. (540 aa)
	FOC1_g10016008	GTPase-activating protein. (752 aa)
	FOC1_g10016067	GTP-binding protein rhoC. (269 aa)
	FOC1_g10015809	Tyrosine-protein phosphatase CDC14. (567 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10003633	FOC1_g10004136	N4UCI6	N4UFM0	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase 6.	0.508
FOC1_g10003633	FOC1_g10004555	N4UCI6	N4UAS3	Chitin synthase; Plays a major role in cell wall biogenesis.	N-acetylglucosaminyltransferase.	0.616
FOC1_g10003633	FOC1_g10005930	N4UCI6	N4TQN6	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase regulatory factor 4.	0.509
FOC1_g10003633	FOC1_g10006708	N4UCI6	N4TZH1	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase D.	0.616
FOC1_g10003633	FOC1_g10006723	N4UCI6	N4TKE0	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase 6.	0.579
FOC1_g10003633	FOC1_g10006724	N4UCI6	N4TZI0	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase 8; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.597
FOC1_g10003633	FOC1_g10009406	N4UCI6	N4UM47	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase 6.	0.508
FOC1_g10003633	FOC1_g10010511	N4UCI6	N4UYC3	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase 8.	0.508
FOC1_g10004136	FOC1_g10003633	N4UFM0	N4UCI6	Chitin synthase 6.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.508
FOC1_g10004136	FOC1_g10005930	N4UFM0	N4TQN6	Chitin synthase 6.	Chitin synthase regulatory factor 4.	0.431
FOC1_g10004136	FOC1_g10008163	N4UFM0	N4TTJ8	Chitin synthase 6.	Chitin synthase 2.	0.562
FOC1_g10004136	FOC1_g10010918	N4UFM0	N4UCD2	Chitin synthase 6.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.508
FOC1_g10004136	FOC1_g10012728	N4UFM0	N4U130	Chitin synthase 6.	Chitin synthase 1; Belongs to the ubiquitin-conjugating enzyme family.	0.508
FOC1_g10004555	FOC1_g10003633	N4UAS3	N4UCI6	N-acetylglucosaminyltransferase.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.616
FOC1_g10004555	FOC1_g10005930	N4UAS3	N4TQN6	N-acetylglucosaminyltransferase.	Chitin synthase regulatory factor 4.	0.511
FOC1_g10004555	FOC1_g10008163	N4UAS3	N4TTJ8	N-acetylglucosaminyltransferase.	Chitin synthase 2.	0.616
FOC1_g10004555	FOC1_g10010918	N4UAS3	N4UCD2	N-acetylglucosaminyltransferase.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.616
FOC1_g10004555	FOC1_g10012728	N4UAS3	N4U130	N-acetylglucosaminyltransferase.	Chitin synthase 1; Belongs to the ubiquitin-conjugating enzyme family.	0.616
FOC1_g10005817	FOC1_g10010194	N4U8Z9	N4UJP6	Flavin_Reduct domain-containing protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.500
FOC1_g10005817	FOC1_g10016067	N4U8Z9	N4TDA5	Flavin_Reduct domain-containing protein.	GTP-binding protein rhoC.	0.694