(11 nodes) Protein-disulfide reductase (NAD(P)) activity network (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10015591	Thioredoxin-like protein 1. (293 aa)
	FOC1_g10009886	Thioredoxin-like protein. (121 aa)
	FOC1_g10011326	Thioredoxin-like protein. (210 aa)
	FOC1_g10014266	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (469 aa)
	FOC1_g10005332	Thioredoxin reductase. (398 aa)
	FOC1_g10008263	Thioredoxin-like protein 1. (134 aa)
	FOC1_g10005267	Thioredoxin domain-containing protein C21C3.12c. (129 aa)
	FOC1_g10009496	Thioredoxin-like protein. (161 aa)
	FOC1_g10008019	Thioredoxin reductase. (380 aa)
	FOC1_g10015258	Thioredoxin-like protein Clot. (112 aa)
	FOC1_g10016136	Thioredoxin reductase. (330 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10005332	FOC1_g10016136	N4UGF8	N4TQ49	Thioredoxin reductase.	Thioredoxin reductase.	0.879
FOC1_g10008019	FOC1_g10016136	N4TXF1	N4TQ49	Thioredoxin reductase.	Thioredoxin reductase.	0.879
FOC1_g10014266	FOC1_g10016136	N4UI61	N4TQ49	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Thioredoxin reductase.	0.898
FOC1_g10016136	FOC1_g10005332	N4TQ49	N4UGF8	Thioredoxin reductase.	Thioredoxin reductase.	0.879
FOC1_g10016136	FOC1_g10008019	N4TQ49	N4TXF1	Thioredoxin reductase.	Thioredoxin reductase.	0.879
FOC1_g10016136	FOC1_g10014266	N4TQ49	N4UI61	Thioredoxin reductase.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.898