41 items (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10011004	60S ribosomal protein L10-A. (221 aa)
	FOC1_g10012560	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	FOC1_g10009978	Uncharacterized protein. (355 aa)
	FOC1_g10010515	60S ribosomal protein L34-B. (116 aa)
	FOC1_g10008454	60S ribosomal protein L21-A. (160 aa)
	FOC1_g10013171	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	FOC1_g10009676	60S ribosomal protein L26-1. (136 aa)
	FOC1_g10010503	60S ribosomal protein L32. (130 aa)
	FOC1_g10010050	Putative 60S ribosomal protein L28e. (159 aa)
	FOC1_g10016450	60S ribosomal protein L23-B; Belongs to the universal ribosomal protein uL14 family. (143 aa)
	FOC1_g10015434	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	FOC1_g10015667	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (200 aa)
	FOC1_g10015524	60S ribosomal protein L9-B. (193 aa)
	FOC1_g10015388	60S ribosomal protein L33-A. (109 aa)
	FOC1_g10016106	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (203 aa)
	FOC1_g10006771	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (212 aa)
	FOC1_g10015661	60S ribosomal protein L35. (125 aa)
	rpl10a	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	FOC1_g10013006	60S ribosomal protein L18-B. (184 aa)
	FOC1_g10006670	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (152 aa)
	FOC1_g10004656	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (182 aa)
	FOC1_g10014888	60S ribosomal protein L24. (160 aa)
	FOC1_g10014499	60S ribosomal protein L27-B. (159 aa)
	FOC1_g10014618	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (79 aa)
	FOC1_g10013763	60S acidic ribosomal protein P0. (382 aa)
	FOC1_g10014880	Ribosomal protein L37; Binds to the 23S rRNA. (100 aa)
	FOC1_g10005989	Uncharacterized protein. (316 aa)
	FOC1_g10006887	60S ribosomal protein L14-A. (147 aa)
	FOC1_g10012761	60S ribosomal protein L22. (131 aa)
	FOC1_g10010060	60S ribosomal protein L25. (153 aa)
	FOC1_g10012839	60S ribosomal protein L5. (302 aa)
	FOC1_g10014701	Uncharacterized protein. (344 aa)
	FOC1_g10013691	60S ribosomal protein L43. (112 aa)
	FOC1_g10013869	60S ribosomal protein L39. (49 aa)
	FOC1_g10013880	60S ribosomal protein L2. (214 aa)
	FOC1_g10010975	Complex I intermediate-associated protein 84, mitochondrial. (791 aa)
	FOC1_g10007586	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	FOC1_g10008538	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (141 aa)
	FOC1_g10013145	60S ribosomal protein L31-B. (122 aa)
	FOC1_g10008910	Uncharacterized protein. (353 aa)
	FOC1_g10011003	60S ribosomal protein L30. (110 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10004656	FOC1_g10005989	N4TTU9	N4U156	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Uncharacterized protein.	0.964
FOC1_g10004656	FOC1_g10006670	N4TTU9	N4TV22	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.998
FOC1_g10004656	FOC1_g10006771	N4TTU9	N4TP90	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
FOC1_g10004656	FOC1_g10006887	N4TTU9	N4TRT0	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L14-A.	0.999
FOC1_g10004656	FOC1_g10007586	N4TTU9	N4UAD3	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	0.999
FOC1_g10004656	FOC1_g10008454	N4TTU9	N4UQL2	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L21-A.	0.999
FOC1_g10004656	FOC1_g10008538	N4TTU9	N4UB52	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
FOC1_g10004656	FOC1_g10008910	N4TTU9	N4UC72	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Uncharacterized protein.	0.964
FOC1_g10004656	FOC1_g10009676	N4TTU9	N4US29	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L26-1.	0.999
FOC1_g10004656	FOC1_g10009978	N4TTU9	N4UH90	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Uncharacterized protein.	0.964
FOC1_g10004656	FOC1_g10010050	N4TTU9	N4UWU3	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Putative 60S ribosomal protein L28e.	0.999
FOC1_g10004656	FOC1_g10010060	N4TTU9	N4UWV0	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L25.	0.999
FOC1_g10004656	FOC1_g10010503	N4TTU9	N4UV02	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L32.	0.999
FOC1_g10004656	FOC1_g10010515	N4TTU9	N4UIU0	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L34-B.	0.998
FOC1_g10004656	FOC1_g10011003	N4TTU9	N4UCJ7	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L30.	0.999
FOC1_g10004656	FOC1_g10011004	N4TTU9	N4UFX0	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L10-A.	0.999
FOC1_g10004656	FOC1_g10012560	N4TTU9	N4UH12	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.997
FOC1_g10004656	FOC1_g10012761	N4TTU9	N4TTF9	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L22.	0.999
FOC1_g10004656	FOC1_g10012839	N4TTU9	N4TJ41	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L5.	0.999
FOC1_g10004656	FOC1_g10013006	N4TTU9	N4TU33	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L18-B.	0.876