13 items (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10016070	Putative maintenance of ploidy protein mob1. (269 aa)
	FOC1_g10015611	Cell division control protein 16. (482 aa)
	FOC1_g10012782	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (462 aa)
	FOC1_g10009273	DnaJ-related protein rsp1. (817 aa)
	FOC1_g10008120	E3 ubiquitin-protein ligase DMA2. (594 aa)
	FOC1_g10012714	Uncharacterized protein. (707 aa)
	FOC1_g10012743	Cell division control protein 14. (296 aa)
	FOC1_g10009099	Serine/threonine-protein kinase svkA. (660 aa)
	FOC1_g10000247	Uncharacterized protein. (694 aa)
	FOC1_g10001157	DnaJ like protein subfamily B member 6-A. (417 aa)
	FOC1_g10010860	Cytokinesis protein sepH. (1427 aa)
	FOC1_g10013313	Septation initiation network scaffold protein cdc11. (1831 aa)
	FOC1_g10009535	Conidiophore development protein hymA. (369 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10000247	FOC1_g10013313	N4U3R2	N4UMU2	Uncharacterized protein.	Septation initiation network scaffold protein cdc11.	0.492
FOC1_g10008120	FOC1_g10013313	N4TRB0	N4UMU2	E3 ubiquitin-protein ligase DMA2.	Septation initiation network scaffold protein cdc11.	0.580
FOC1_g10008120	FOC1_g10015611	N4TRB0	N4TC47	E3 ubiquitin-protein ligase DMA2.	Cell division control protein 16.	0.734
FOC1_g10008120	FOC1_g10016070	N4TRB0	N4TXD6	E3 ubiquitin-protein ligase DMA2.	Putative maintenance of ploidy protein mob1.	0.445
FOC1_g10009099	FOC1_g10009535	N4U352	N4URQ1	Serine/threonine-protein kinase svkA.	Conidiophore development protein hymA.	0.949
FOC1_g10009099	FOC1_g10010860	N4U352	N4UFK2	Serine/threonine-protein kinase svkA.	Cytokinesis protein sepH.	0.625
FOC1_g10009099	FOC1_g10012743	N4U352	N4TXW5	Serine/threonine-protein kinase svkA.	Cell division control protein 14.	0.494
FOC1_g10009099	FOC1_g10013313	N4U352	N4UMU2	Serine/threonine-protein kinase svkA.	Septation initiation network scaffold protein cdc11.	0.543
FOC1_g10009099	FOC1_g10016070	N4U352	N4TXD6	Serine/threonine-protein kinase svkA.	Putative maintenance of ploidy protein mob1.	0.569
FOC1_g10009535	FOC1_g10009099	N4URQ1	N4U352	Conidiophore development protein hymA.	Serine/threonine-protein kinase svkA.	0.949
FOC1_g10009535	FOC1_g10013313	N4URQ1	N4UMU2	Conidiophore development protein hymA.	Septation initiation network scaffold protein cdc11.	0.462
FOC1_g10009535	FOC1_g10016070	N4URQ1	N4TXD6	Conidiophore development protein hymA.	Putative maintenance of ploidy protein mob1.	0.532
FOC1_g10010860	FOC1_g10009099	N4UFK2	N4U352	Cytokinesis protein sepH.	Serine/threonine-protein kinase svkA.	0.625
FOC1_g10010860	FOC1_g10012743	N4UFK2	N4TXW5	Cytokinesis protein sepH.	Cell division control protein 14.	0.505
FOC1_g10010860	FOC1_g10013313	N4UFK2	N4UMU2	Cytokinesis protein sepH.	Septation initiation network scaffold protein cdc11.	0.986
FOC1_g10010860	FOC1_g10015611	N4UFK2	N4TC47	Cytokinesis protein sepH.	Cell division control protein 16.	0.979
FOC1_g10010860	FOC1_g10016070	N4UFK2	N4TXD6	Cytokinesis protein sepH.	Putative maintenance of ploidy protein mob1.	0.944
FOC1_g10012743	FOC1_g10009099	N4TXW5	N4U352	Cell division control protein 14.	Serine/threonine-protein kinase svkA.	0.494
FOC1_g10012743	FOC1_g10010860	N4TXW5	N4UFK2	Cell division control protein 14.	Cytokinesis protein sepH.	0.505
FOC1_g10012743	FOC1_g10013313	N4TXW5	N4UMU2	Cell division control protein 14.	Septation initiation network scaffold protein cdc11.	0.504