10 items (Fusarium oxysporum f. sp. cubense race 1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC1_g10012376	ANK_REP_REGION domain-containing protein. (188 aa)
	FOC1_g10015809	Tyrosine-protein phosphatase CDC14. (567 aa)
	FOC1_g10014912	Putative serine/threonine-protein kinase HSL1. (1111 aa)
	FOC1_g10001017	Uncharacterized protein. (164 aa)
	FOC1_g10013911	Non-specific serine/threonine protein kinase. (858 aa)
	FOC1_g10008405	Ras-related C3 botulinum toxin substrate 1. (199 aa)
	FOC1_g10010933	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (418 aa)
	FOC1_g10009730	Exportin-1. (1079 aa)
	FOC1_g10011279	Non-specific serine/threonine protein kinase. (843 aa)
	FOC1_g10008616	Cell division control protein 42 like protein. (195 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 1

NCBI taxonomy Id: 1229664
Other names: F. oxysporum f. sp. cubense race 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC1_g10001017	FOC1_g10008405	N4TVW8	N4U7C1	Uncharacterized protein.	Ras-related C3 botulinum toxin substrate 1.	0.759
FOC1_g10001017	FOC1_g10008616	N4TVW8	N4USQ6	Uncharacterized protein.	Cell division control protein 42 like protein.	0.777
FOC1_g10001017	FOC1_g10009730	N4TVW8	N4UCP8	Uncharacterized protein.	Exportin-1.	0.778
FOC1_g10001017	FOC1_g10011279	N4TVW8	N4UDT3	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.765
FOC1_g10001017	FOC1_g10013911	N4TVW8	N4TZN3	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.765
FOC1_g10001017	FOC1_g10014912	N4TVW8	N4THC5	Uncharacterized protein.	Putative serine/threonine-protein kinase HSL1.	0.690
FOC1_g10001017	FOC1_g10015809	N4TVW8	N4TCM2	Uncharacterized protein.	Tyrosine-protein phosphatase CDC14.	0.793
FOC1_g10008405	FOC1_g10001017	N4U7C1	N4TVW8	Ras-related C3 botulinum toxin substrate 1.	Uncharacterized protein.	0.759
FOC1_g10008405	FOC1_g10008616	N4U7C1	N4USQ6	Ras-related C3 botulinum toxin substrate 1.	Cell division control protein 42 like protein.	0.534
FOC1_g10008405	FOC1_g10010933	N4U7C1	N4UCE4	Ras-related C3 botulinum toxin substrate 1.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.759
FOC1_g10008405	FOC1_g10011279	N4U7C1	N4UDT3	Ras-related C3 botulinum toxin substrate 1.	Non-specific serine/threonine protein kinase.	0.955
FOC1_g10008405	FOC1_g10013911	N4U7C1	N4TZN3	Ras-related C3 botulinum toxin substrate 1.	Non-specific serine/threonine protein kinase.	0.955
FOC1_g10008405	FOC1_g10015809	N4U7C1	N4TCM2	Ras-related C3 botulinum toxin substrate 1.	Tyrosine-protein phosphatase CDC14.	0.418
FOC1_g10008616	FOC1_g10001017	N4USQ6	N4TVW8	Cell division control protein 42 like protein.	Uncharacterized protein.	0.777
FOC1_g10008616	FOC1_g10008405	N4USQ6	N4U7C1	Cell division control protein 42 like protein.	Ras-related C3 botulinum toxin substrate 1.	0.534
FOC1_g10008616	FOC1_g10010933	N4USQ6	N4UCE4	Cell division control protein 42 like protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.777
FOC1_g10008616	FOC1_g10011279	N4USQ6	N4UDT3	Cell division control protein 42 like protein.	Non-specific serine/threonine protein kinase.	0.983
FOC1_g10008616	FOC1_g10013911	N4USQ6	N4TZN3	Cell division control protein 42 like protein.	Non-specific serine/threonine protein kinase.	0.983
FOC1_g10008616	FOC1_g10015809	N4USQ6	N4TCM2	Cell division control protein 42 like protein.	Tyrosine-protein phosphatase CDC14.	0.444
FOC1_g10009730	FOC1_g10001017	N4UCP8	N4TVW8	Exportin-1.	Uncharacterized protein.	0.778