(50 nodes) RNA polymerase II, holoenzyme network (Fusarium oxysporum f. sp. cubense race 4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC4_g10012909	Transcription initiation factor TFIID subunit 13. (163 aa)
	FOC4_g10012418	Transcription initiation factor TFIID subunit 11. (320 aa)
	FOC4_g10012659	Transcription initiation factor TFIID subunit 12. (678 aa)
	FOC4_g10010974	Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (413 aa)
	FOC4_g10012647	Meiotic recombination protein rec14. (318 aa)
	FOC4_g10007367	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (188 aa)
	FOC4_g10013974	RNA polymerase-associated protein RTF1. (596 aa)
	FOC4_g10014608	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (80 aa)
	FOC4_g10008226	Transcription initiation factor IIF subunit alpha. (657 aa)
	FOC4_g10008236	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	FOC4_g10011424	Tetratricopeptide repeat protein 1. (1217 aa)
	FOC4_g10015282	Transcription initiation factor TFIID subunit 3. (232 aa)
	FOC4_g10007926	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (72 aa)
	FOC4_g10006760	CID domain-containing protein. (408 aa)
	FOC4_g10003128	PHD domain-containing protein. (718 aa)
	FOC4_g10012615	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (421 aa)
	FOC4_g10010800	DNA-directed RNA polymerase II subunit RPB9. (186 aa)
	FOC4_g10005819	Putative DNA repair helicase ercc3. (748 aa)
	FOC4_g10006654	Transcription initiation factor TFIID subunit 5. (758 aa)
	FOC4_g10006776	Transcription initiation factor IIE subunit alpha. (375 aa)
	FOC4_g10011684	Uncharacterized protein. (311 aa)
	FOC4_g10011863	Cell division control protein 73. (407 aa)
	FOC4_g10014030	Transcription initiation factor TFIID subunit 8. (292 aa)
	FOC4_g10014476	Transcription initiation factor IIA large subunit. (397 aa)
	FOC4_g10011665	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (236 aa)
	FOC4_g10014986	RNA polymerase-associated protein LEO1. (407 aa)
	FOC4_g10015157	Transcription initiation factor TFIID subunit 7. (494 aa)
	FOC4_g10015310	DNA-directed RNA polymerase II subunit rpb4. (158 aa)
	FOC4_g10015301	Transcription initiation factor IIF subunit beta. (434 aa)
	FOC4_g10015413	DNA-directed RNA polymerase II subunit rpb7. (172 aa)
	FOC4_g10005992	Putative RNA polymerase II transcription factor B subunit 1. (649 aa)
	FOC4_g10005975	DNA repair helicase rad15. (774 aa)
	FOC4_g10014579	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1751 aa)
	FOC4_g10014645	Transcription initiation factor TFIID subunit 9. (253 aa)
	FOC4_g10014861	Repetitive proline-rich cell wall protein 1. (448 aa)
	FOC4_g10010322	DNA-directed RNA polymerase II subunit RPB11. (136 aa)
	FOC4_g10010456	RNA polymerase II-associated protein 1 like protein. (478 aa)
	FOC4_g10010472	Putative DNA repair helicase ercc3. (825 aa)
	FOC4_g10010614	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (154 aa)
	FOC4_g10000720	Cyclin CCL1. (348 aa)
	FOC4_g10001392	RNA polymerase II transcription factor B subunit 3. (363 aa)
	FOC4_g10005248	Vegetative incompatibility protein HET-E-1. (260 aa)
	FOC4_g10004624	RNA polymerase II transcription factor B subunit 4. (358 aa)
	FOC4_g10001720	Acyl_transf_3 domain-containing protein. (346 aa)
	FOC4_g10008326	Transcription initiation factor TFIID subunit 6. (463 aa)
	FOC4_g10009029	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1262 aa)
	FOC4_g10000050	Uncharacterized protein. (685 aa)
	FOC4_g10009645	Ankyrin repeat domain-containing protein 17. (1744 aa)
	FOC4_g10008325	Transcription initiation factor TFIID subunit 6. (382 aa)
	FOC4_g10007162	DNA-directed RNA polymerase II subunit RPB3. (340 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 4

NCBI taxonomy Id: 1229665
Other names: F. oxysporum f. sp. cubense race 4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC4_g10000050	FOC4_g10005975	N1RX43	N1RAU6	Uncharacterized protein.	DNA repair helicase rad15.	0.551
FOC4_g10000050	FOC4_g10006760	N1RX43	N1RLH2	Uncharacterized protein.	CID domain-containing protein.	0.646
FOC4_g10000050	FOC4_g10009029	N1RX43	N1RYS8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.430
FOC4_g10000050	FOC4_g10010614	N1RX43	N1RF24	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.477
FOC4_g10000050	FOC4_g10011665	N1RX43	N1R6V3	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.635
FOC4_g10000050	FOC4_g10015310	N1RX43	N1R823	Uncharacterized protein.	DNA-directed RNA polymerase II subunit rpb4.	0.854
FOC4_g10000050	FOC4_g10015413	N1RX43	N1RAA3	Uncharacterized protein.	DNA-directed RNA polymerase II subunit rpb7.	0.724
FOC4_g10000720	FOC4_g10001392	N1S9K9	N1S5J3	Cyclin CCL1.	RNA polymerase II transcription factor B subunit 3.	0.998
FOC4_g10000720	FOC4_g10001720	N1S9K9	N1S2H5	Cyclin CCL1.	Acyl_transf_3 domain-containing protein.	0.876
FOC4_g10000720	FOC4_g10003128	N1S9K9	N1RLZ9	Cyclin CCL1.	PHD domain-containing protein.	0.981
FOC4_g10000720	FOC4_g10004624	N1S9K9	N1S363	Cyclin CCL1.	RNA polymerase II transcription factor B subunit 4.	0.997
FOC4_g10000720	FOC4_g10005248	N1S9K9	N1S3M3	Cyclin CCL1.	Vegetative incompatibility protein HET-E-1.	0.838
FOC4_g10000720	FOC4_g10005819	N1S9K9	N1RQ65	Cyclin CCL1.	Putative DNA repair helicase ercc3.	0.983
FOC4_g10000720	FOC4_g10005975	N1S9K9	N1RAU6	Cyclin CCL1.	DNA repair helicase rad15.	0.997
FOC4_g10000720	FOC4_g10005992	N1S9K9	N1RAE1	Cyclin CCL1.	Putative RNA polymerase II transcription factor B subunit 1.	0.995
FOC4_g10000720	FOC4_g10006654	N1S9K9	N1RQ89	Cyclin CCL1.	Transcription initiation factor TFIID subunit 5.	0.838
FOC4_g10000720	FOC4_g10006776	N1S9K9	N1RQI9	Cyclin CCL1.	Transcription initiation factor IIE subunit alpha.	0.995
FOC4_g10000720	FOC4_g10007162	N1S9K9	N1RG39	Cyclin CCL1.	DNA-directed RNA polymerase II subunit RPB3.	0.991
FOC4_g10000720	FOC4_g10007367	N1S9K9	N1RGQ8	Cyclin CCL1.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.966
FOC4_g10000720	FOC4_g10007926	N1S9K9	N1RJE0	Cyclin CCL1.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.990