(33 nodes) Response to topologically incorrect protein network (Fusarium oxysporum f. sp. cubense race 4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC4_g10008632	Cell division control protein 48; Belongs to the AAA ATPase family. (821 aa)
	FOC4_g10008692	Heat shock protein hsp98; Belongs to the ClpA/ClpB family. (887 aa)
	FOC4_g10012941	Ubiquitin fusion degradation protein 1. (381 aa)
	FOC4_g10013054	Uncharacterized protein. (349 aa)
	FOC4_g10013122	DnaJ like protein subfamily C member 3. (521 aa)
	FOC4_g10003147	F-box domain-containing protein. (360 aa)
	FOC4_g10004642	Uncharacterized protein. (102 aa)
	FOC4_g10002837	Uncharacterized protein. (371 aa)
	FOC4_g10004578	Hypoxia up-regulated protein 1. (1007 aa)
	FOC4_g10001055	Transcriptional activator hac1. (482 aa)
	FOC4_g10011758	STIP1 like proteiny and U box-containing protein 1. (270 aa)
	FOC4_g10011994	Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	FOC4_g10011948	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family. (677 aa)
	FOC4_g10012272	Serine/threonine-protein kinase/endoribonuclease IRE1. (843 aa)
	FOC4_g10014681	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family. (650 aa)
	FOC4_g10007364	Putative J domain-containing protein C17A3.05c. (364 aa)
	FOC4_g10012271	Serine/threonine-protein kinase ppk4; Belongs to the protein kinase superfamily. (447 aa)
	FOC4_g10013680	Tethering factor for nuclear proteasome STS1; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (302 aa)
	FOC4_g10013685	Protein ORM1. (186 aa)
	FOC4_g10015409	Nuclear protein localization protein 4. (646 aa)
	FOC4_g10006192	Protein OS-9 like protein. (517 aa)
	FOC4_g10006733	Ubiquitin carboxyl-terminal hydrolase. (323 aa)
	FOC4_g10013414	DnaJ-related protein SCJ1. (414 aa)
	FOC4_g10013841	Uncharacterized protein. (440 aa)
	FOC4_g10012503	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (423 aa)
	FOC4_g10013053	Uncharacterized protein. (198 aa)
	FOC4_g10011117	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (259 aa)
	FOC4_g10008285	Clock-controlled protein 8. (562 aa)
	FOC4_g10007841	Mitochondrial outer membrane protein IML2. (699 aa)
	FOC4_g10003383	Putative ATPase YjoB. (530 aa)
	FOC4_g10008645	E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8. (520 aa)
	FOC4_g10003400	Ubiquitin thioesterase OTU1. (368 aa)
	FOC4_g10003431	UDP-glucose:glycoprotein glucosyltransferase. (1464 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 4

NCBI taxonomy Id: 1229665
Other names: F. oxysporum f. sp. cubense race 4

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC4_g10001055	FOC4_g10004578	N1S9H5	N1S945	Transcriptional activator hac1.	Hypoxia up-regulated protein 1.	0.471
FOC4_g10001055	FOC4_g10012271	N1S9H5	N1RFQ5	Transcriptional activator hac1.	Serine/threonine-protein kinase ppk4; Belongs to the protein kinase superfamily.	0.703
FOC4_g10001055	FOC4_g10012272	N1S9H5	N1R7V7	Transcriptional activator hac1.	Serine/threonine-protein kinase/endoribonuclease IRE1.	0.703
FOC4_g10001055	FOC4_g10013414	N1S9H5	N1RLU3	Transcriptional activator hac1.	DnaJ-related protein SCJ1.	0.444
FOC4_g10002837	FOC4_g10003383	N1S838	N1RUT8	Uncharacterized protein.	Putative ATPase YjoB.	0.649
FOC4_g10002837	FOC4_g10008632	N1S838	N1RXR8	Uncharacterized protein.	Cell division control protein 48; Belongs to the AAA ATPase family.	0.649
FOC4_g10003147	FOC4_g10003383	N1S4E0	N1RUT8	F-box domain-containing protein.	Putative ATPase YjoB.	0.649
FOC4_g10003147	FOC4_g10008632	N1S4E0	N1RXR8	F-box domain-containing protein.	Cell division control protein 48; Belongs to the AAA ATPase family.	0.649
FOC4_g10003383	FOC4_g10002837	N1RUT8	N1S838	Putative ATPase YjoB.	Uncharacterized protein.	0.649
FOC4_g10003383	FOC4_g10003147	N1RUT8	N1S4E0	Putative ATPase YjoB.	F-box domain-containing protein.	0.649
FOC4_g10003383	FOC4_g10003400	N1RUT8	N1RX67	Putative ATPase YjoB.	Ubiquitin thioesterase OTU1.	0.978
FOC4_g10003383	FOC4_g10004642	N1RUT8	N1S6U7	Putative ATPase YjoB.	Uncharacterized protein.	0.963
FOC4_g10003383	FOC4_g10006192	N1RUT8	N1RK53	Putative ATPase YjoB.	Protein OS-9 like protein.	0.963
FOC4_g10003383	FOC4_g10008645	N1RUT8	N1RWH4	Putative ATPase YjoB.	E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8.	0.685
FOC4_g10003383	FOC4_g10011117	N1RUT8	N1RS86	Putative ATPase YjoB.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.981
FOC4_g10003383	FOC4_g10012941	N1RUT8	N1S1V8	Putative ATPase YjoB.	Ubiquitin fusion degradation protein 1.	0.983
FOC4_g10003383	FOC4_g10014681	N1RUT8	N1RBL1	Putative ATPase YjoB.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.639
FOC4_g10003383	FOC4_g10015409	N1RUT8	N1RJG2	Putative ATPase YjoB.	Nuclear protein localization protein 4.	0.986
FOC4_g10003400	FOC4_g10003383	N1RX67	N1RUT8	Ubiquitin thioesterase OTU1.	Putative ATPase YjoB.	0.978
FOC4_g10003400	FOC4_g10008632	N1RX67	N1RXR8	Ubiquitin thioesterase OTU1.	Cell division control protein 48; Belongs to the AAA ATPase family.	0.978