(20 nodes) post-mRNA release spliceosomal complex network (Fusarium oxysporum f. sp. cubense race 4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC4_g10004496	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43. (767 aa)
	FOC4_g10014103	Pre-mRNA-splicing factor ISY1. (243 aa)
	FOC4_g10014336	Uncharacterized protein. (461 aa)
	FOC4_g10013277	G-patch domain-containing protein. (790 aa)
	FOC4_g10014335	Small nuclear ribonucleoprotein G. (91 aa)
	FOC4_g10015042	Uncharacterized protein. (553 aa)
	FOC4_g10007079	Putative small nuclear ribonucleoprotein F. (89 aa)
	FOC4_g10007844	Pre-mRNA-splicing factor cwf19. (691 aa)
	FOC4_g10013894	Cell cycle control protein cwf18. (218 aa)
	FOC4_g10013989	Pre-mRNA-splicing factor SPF27. (200 aa)
	FOC4_g10010416	Pre-mRNA-splicing factor SYF2. (266 aa)
	FOC4_g10003046	Pre-mRNA-splicing factor clf1. (674 aa)
	FOC4_g10013110	Uncharacterized protein. (485 aa)
	FOC4_g10011019	Protein DGCR14 like protein. (450 aa)
	FOC4_g10012808	Pre-mRNA-splicing factor CWC2. (404 aa)
	FOC4_g10012858	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43. (413 aa)
	FOC4_g10012956	UPF0667 family protein C31G5.18c. (282 aa)
	FOC4_g10008756	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1439 aa)
	FOC4_g10001043	G patch domain-containing protein 8. (167 aa)
	FOC4_g10001048	Pre-mRNA-splicing factor slt-11. (368 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 4

NCBI taxonomy Id: 1229665
Other names: F. oxysporum f. sp. cubense race 4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC4_g10001043	FOC4_g10001048	N1S8I8	N1S8J2	G patch domain-containing protein 8.	Pre-mRNA-splicing factor slt-11.	0.882
FOC4_g10001043	FOC4_g10003046	N1S8I8	N1RJI6	G patch domain-containing protein 8.	Pre-mRNA-splicing factor clf1.	0.929
FOC4_g10001043	FOC4_g10004496	N1S8I8	N1S8Y2	G patch domain-containing protein 8.	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.	0.868
FOC4_g10001043	FOC4_g10007079	N1S8I8	N1RCX3	G patch domain-containing protein 8.	Putative small nuclear ribonucleoprotein F.	0.725
FOC4_g10001043	FOC4_g10007844	N1S8I8	N1RGP0	G patch domain-containing protein 8.	Pre-mRNA-splicing factor cwf19.	0.737
FOC4_g10001043	FOC4_g10010416	N1S8I8	N1RHQ1	G patch domain-containing protein 8.	Pre-mRNA-splicing factor SYF2.	0.934
FOC4_g10001043	FOC4_g10012808	N1S8I8	N1RSN6	G patch domain-containing protein 8.	Pre-mRNA-splicing factor CWC2.	0.410
FOC4_g10001043	FOC4_g10012858	N1S8I8	N1RSS8	G patch domain-containing protein 8.	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.	0.868
FOC4_g10001043	FOC4_g10012956	N1S8I8	N1S1X3	G patch domain-containing protein 8.	UPF0667 family protein C31G5.18c.	0.641
FOC4_g10001043	FOC4_g10013110	N1S8I8	N1RPZ7	G patch domain-containing protein 8.	Uncharacterized protein.	0.410
FOC4_g10001043	FOC4_g10013894	N1S8I8	N1RGY6	G patch domain-containing protein 8.	Cell cycle control protein cwf18.	0.680
FOC4_g10001043	FOC4_g10014103	N1S8I8	N1R6B9	G patch domain-containing protein 8.	Pre-mRNA-splicing factor ISY1.	0.641
FOC4_g10001043	FOC4_g10014335	N1S8I8	N1RAW8	G patch domain-containing protein 8.	Small nuclear ribonucleoprotein G.	0.908
FOC4_g10001043	FOC4_g10014336	N1S8I8	N1R6I8	G patch domain-containing protein 8.	Uncharacterized protein.	0.611
FOC4_g10001048	FOC4_g10001043	N1S8J2	N1S8I8	Pre-mRNA-splicing factor slt-11.	G patch domain-containing protein 8.	0.882
FOC4_g10001048	FOC4_g10003046	N1S8J2	N1RJI6	Pre-mRNA-splicing factor slt-11.	Pre-mRNA-splicing factor clf1.	0.997
FOC4_g10001048	FOC4_g10004496	N1S8J2	N1S8Y2	Pre-mRNA-splicing factor slt-11.	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.	0.865
FOC4_g10001048	FOC4_g10007079	N1S8J2	N1RCX3	Pre-mRNA-splicing factor slt-11.	Putative small nuclear ribonucleoprotein F.	0.961
FOC4_g10001048	FOC4_g10007844	N1S8J2	N1RGP0	Pre-mRNA-splicing factor slt-11.	Pre-mRNA-splicing factor cwf19.	0.922
FOC4_g10001048	FOC4_g10008756	N1S8J2	N1S6X4	Pre-mRNA-splicing factor slt-11.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.993