(35 nodes) SCF ubiquitin ligase complex network (Fusarium oxysporum f. sp. cubense race 4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC4_g10014462	Arylsulfatase. (556 aa)
	FOC4_g10001299	Carotenoid 9,10(9',10')-cleavage dioxygenase. (588 aa)
	FOC4_g10001553	Putative sulfatase PB10D8.02c. (514 aa)
	FOC4_g10010216	Uncharacterized protein. (288 aa)
	FOC4_g10003752	Vegetative incompatibility protein HET-E-1. (1088 aa)
	FOC4_g10010137	Arylsulfatase. (605 aa)
	FOC4_g10009817	Arylsulfatase. (552 aa)
	FOC4_g10001448	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (114 aa)
	FOC4_g10013969	F-box/TPR repeat protein pof3. (659 aa)
	FOC4_g10011066	F-box domain-containing protein. (622 aa)
	FOC4_g10010697	F-box/WD repeat-containing protein 1A. (723 aa)
	FOC4_g10007812	N-acetylgalactosamine-6-sulfatase. (446 aa)
	FOC4_g10007850	Uncharacterized protein. (160 aa)
	FOC4_g10006549	SCF E3 ubiquitin ligase complex F-box protein grrA. (1077 aa)
	FOC4_g10012498	DNA repair protein rhp7. (1191 aa)
	FOC4_g10003657	Uncharacterized protein. (475 aa)
	FOC4_g10001312	Carotenoid 9,10(9',10')-cleavage dioxygenase. (350 aa)
	FOC4_g10004999	Carotenoid 9,10(9',10')-cleavage dioxygenase. (556 aa)
	FOC4_g10001313	Carotenoid 9,10(9',10')-cleavage dioxygenase. (563 aa)
	FOC4_g10005160	MARVEL domain-containing protein. (246 aa)
	FOC4_g10012804	Ubiquitin-conjugating enzyme E2-34 kDa. (224 aa)
	FOC4_g10014705	Uncharacterized protein. (590 aa)
	FOC4_g10014271	F-box/LRR-repeat protein 7. (990 aa)
	FOC4_h10017501	Uncharacterized protein. (858 aa)
	FOC4_g10000927	Carotenoid 9,10(9',10')-cleavage dioxygenase. (546 aa)
	FOC4_g10004561	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	FOC4_g10001753	Apocarotenoid-15,15'-oxygenase. (469 aa)
	FOC4_g10004418	Uncharacterized protein. (343 aa)
	FOC4_g10004413	F-box domain-containing protein. (474 aa)
	FOC4_g10007829	Uncharacterized protein. (519 aa)
	FOC4_g10010895	N-sulfoglucosamine sulfohydrolase. (490 aa)
	FOC4_g10011396	F-box/LRR-repeat protein 2. (691 aa)
	FOC4_g10011731	Uncharacterized protein. (290 aa)
	FOC4_g10013303	F-box/WD repeat-containing protein 1A. (874 aa)
	FOC4_g10015303	NEDD8. (80 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 4

NCBI taxonomy Id: 1229665
Other names: F. oxysporum f. sp. cubense race 4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC4_g10001448	FOC4_g10004561	N1RZ26	N1S930	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.403
FOC4_g10001448	FOC4_g10015303	N1RZ26	N1RAK8	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	NEDD8.	0.821
FOC4_g10003752	FOC4_g10004561	N1S1F4	N1S930	Vegetative incompatibility protein HET-E-1.	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.708
FOC4_g10003752	FOC4_g10012804	N1S1F4	N1RW19	Vegetative incompatibility protein HET-E-1.	Ubiquitin-conjugating enzyme E2-34 kDa.	0.663
FOC4_g10003752	FOC4_g10015303	N1S1F4	N1RAK8	Vegetative incompatibility protein HET-E-1.	NEDD8.	0.887
FOC4_g10004413	FOC4_g10004418	N1S5T4	N1S5T8	F-box domain-containing protein.	Uncharacterized protein.	0.603
FOC4_g10004413	FOC4_g10011396	N1S5T4	N1RFM1	F-box domain-containing protein.	F-box/LRR-repeat protein 2.	0.431
FOC4_g10004418	FOC4_g10004413	N1S5T8	N1S5T4	Uncharacterized protein.	F-box domain-containing protein.	0.603
FOC4_g10004561	FOC4_g10001448	N1S930	N1RZ26	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.403
FOC4_g10004561	FOC4_g10003752	N1S930	N1S1F4	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	Vegetative incompatibility protein HET-E-1.	0.708
FOC4_g10004561	FOC4_g10010697	N1S930	N1RIL8	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	F-box/WD repeat-containing protein 1A.	0.867
FOC4_g10004561	FOC4_g10012804	N1S930	N1RW19	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2-34 kDa.	0.744
FOC4_g10004561	FOC4_g10013303	N1S930	N1RC30	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	F-box/WD repeat-containing protein 1A.	0.867
FOC4_g10004561	FOC4_g10013969	N1S930	N1RH80	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	F-box/TPR repeat protein pof3.	0.427
FOC4_g10004561	FOC4_g10015303	N1S930	N1RAK8	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	NEDD8.	0.837
FOC4_g10006549	FOC4_g10010697	N1RKC1	N1RIL8	SCF E3 ubiquitin ligase complex F-box protein grrA.	F-box/WD repeat-containing protein 1A.	0.739
FOC4_g10006549	FOC4_g10012804	N1RKC1	N1RW19	SCF E3 ubiquitin ligase complex F-box protein grrA.	Ubiquitin-conjugating enzyme E2-34 kDa.	0.589
FOC4_g10006549	FOC4_g10013303	N1RKC1	N1RC30	SCF E3 ubiquitin ligase complex F-box protein grrA.	F-box/WD repeat-containing protein 1A.	0.739
FOC4_g10006549	FOC4_g10015303	N1RKC1	N1RAK8	SCF E3 ubiquitin ligase complex F-box protein grrA.	NEDD8.	0.809
FOC4_g10010697	FOC4_g10004561	N1RIL8	N1S930	F-box/WD repeat-containing protein 1A.	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.867