31 items (Fusarium oxysporum f. sp. cubense race 4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC4_g10011679	Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (444 aa)
	FOC4_g10011526	NIPA-like protein. (504 aa)
	FOC4_g10011705	Isopentenyl-diphosphate Delta-isomerase. (253 aa)
	FOC4_g10014707	Alkyl transferase; Belongs to the UPP synthase family. (363 aa)
	FOC4_g10011995	Acetyl-CoA acetyltransferase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family. (430 aa)
	FOC4_g10013398	Uncharacterized protein. (196 aa)
	FOC4_g10013639	Mitochondrial metalloendopeptidase OMA1. (371 aa)
	FOC4_g10010359	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. (347 aa)
	FOC4_g10013371	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family. (391 aa)
	FOC4_g10014215	Uncharacterized protein. (408 aa)
	FOC4_g10007552	Geranylgeranyl pyrophosphate synthase. (247 aa)
	FOC4_g10006973	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (769 aa)
	FOC4_g10013749	Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. (418 aa)
	FOC4_g10012488	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha. (523 aa)
	FOC4_g10012503	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (423 aa)
	FOC4_g10013967	Mitochondrial import receptor subunit tom-70. (620 aa)
	FOC4_g10012667	Putative prenylcysteine oxidase. (549 aa)
	FOC4_g10012486	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (508 aa)
	FOC4_g10002995	Putative undecaprenyl pyrophosphate synthase. (327 aa)
	FOC4_g10000480	3-hydroxy-3-methylglutaryl-coenzyme A reductase. (385 aa)
	FOC4_g10012487	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha. (453 aa)
	FOC4_g10002993	Putative undecaprenyl pyrophosphate synthase. (136 aa)
	FOC4_g10009192	Putative CAAX prenyl protease 2. (304 aa)
	FOC4_g10001427	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (989 aa)
	FOC4_g10009298	Protein-S-isoprenylcysteine O-methyltransferase; Belongs to the class VI-like SAM-binding methyltransferase superfamily. Isoprenylcysteine carboxyl methyltransferase family. (239 aa)
	FOC4_g10001629	Putative isoprenylcysteine alpha-carbonyl methylesterase ICMEL1. (315 aa)
	FOC4_g10001858	3-hydroxy-3-methylglutaryl-coenzyme A reductase. (285 aa)
	FOC4_g10001182	Uncharacterized protein. (354 aa)
	FOC4_g10002512	Uncharacterized protein. (363 aa)
	FOC4_g10004714	Putative hexaprenyl pyrophosphate synthase, mitochondrial; Belongs to the FPP/GGPP synthase family. (455 aa)
	FOC4_g10010015	Protein-S-isoprenylcysteine O-methyltransferase; Belongs to the class VI-like SAM-binding methyltransferase superfamily. Isoprenylcysteine carboxyl methyltransferase family. (210 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 4

NCBI taxonomy Id: 1229665
Other names: F. oxysporum f. sp. cubense race 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC4_g10000480	FOC4_g10001182	N1RTM2	N1S7K3	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Uncharacterized protein.	0.405
FOC4_g10000480	FOC4_g10002512	N1RTM2	N1S871	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Uncharacterized protein.	0.488
FOC4_g10000480	FOC4_g10004714	N1RTM2	N1S9B3	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Putative hexaprenyl pyrophosphate synthase, mitochondrial; Belongs to the FPP/GGPP synthase family.	0.517
FOC4_g10000480	FOC4_g10007552	N1RTM2	N1RKH0	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Geranylgeranyl pyrophosphate synthase.	0.544
FOC4_g10000480	FOC4_g10010359	N1RTM2	N1REE7	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.657
FOC4_g10000480	FOC4_g10011679	N1RTM2	N1R5Y8	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	0.580
FOC4_g10000480	FOC4_g10011705	N1RTM2	N1R6L2	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Isopentenyl-diphosphate Delta-isomerase.	0.697
FOC4_g10000480	FOC4_g10011995	N1RTM2	N1R750	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Acetyl-CoA acetyltransferase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	0.507
FOC4_g10000480	FOC4_g10012486	N1RTM2	N1RR78	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	0.878
FOC4_g10000480	FOC4_g10013371	N1RTM2	N1RFK0	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	0.869
FOC4_g10000480	FOC4_g10013398	N1RTM2	N1RCN1	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Uncharacterized protein.	0.488
FOC4_g10000480	FOC4_g10013749	N1RTM2	N1RMM3	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.646
FOC4_g10001182	FOC4_g10000480	N1S7K3	N1RTM2	Uncharacterized protein.	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	0.405
FOC4_g10001182	FOC4_g10001858	N1S7K3	N1S612	Uncharacterized protein.	3-hydroxy-3-methylglutaryl-coenzyme A reductase.	0.405
FOC4_g10001182	FOC4_g10010359	N1S7K3	N1REE7	Uncharacterized protein.	Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.468
FOC4_g10001182	FOC4_g10011679	N1S7K3	N1R5Y8	Uncharacterized protein.	Phosphomevalonate kinase; Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	0.468
FOC4_g10001182	FOC4_g10011705	N1S7K3	N1R6L2	Uncharacterized protein.	Isopentenyl-diphosphate Delta-isomerase.	0.493
FOC4_g10001182	FOC4_g10012486	N1S7K3	N1RR78	Uncharacterized protein.	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	0.840
FOC4_g10001182	FOC4_g10013371	N1S7K3	N1RFK0	Uncharacterized protein.	Diphosphomevalonate decarboxylase; Belongs to the diphosphomevalonate decarboxylase family.	0.716
FOC4_g10001427	FOC4_g10012503	N1RZ10	N1RN77	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.	0.576