(6 nodes) Pwp2p-containing subcomplex of 90S preribosome network (Cytospora leucostoma)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VPNG_05342	F-box domain-containing protein. (1174 aa)
	VPNG_07557	WD_REPEATS_REGION domain-containing protein. (962 aa)
	VPNG_06242	Utp12 domain-containing protein. (404 aa)
	VPNG_06385	Uncharacterized protein. (407 aa)
	VPNG_05703	WD_REPEATS_REGION domain-containing protein. (900 aa)
	VPNG_00136	Uncharacterized protein. (601 aa)

Your Current Organism:

Cytospora leucostoma

NCBI taxonomy Id: 1230097
Other names: C. leucostoma, Leucostoma leucostoma, Leucostoma persoonii, Valsa leucostoma, Valsa persoonii

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VPNG_00136	VPNG_05703	A0A423XNE9	A0A423X054	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
VPNG_00136	VPNG_06242	A0A423XNE9	A0A423WYK7	Uncharacterized protein.	Utp12 domain-containing protein.	0.999
VPNG_00136	VPNG_06385	A0A423XNE9	A0A423WZ40	Uncharacterized protein.	Uncharacterized protein.	0.999
VPNG_00136	VPNG_07557	A0A423XNE9	A0A423WDU6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
VPNG_05703	VPNG_00136	A0A423X054	A0A423XNE9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
VPNG_05703	VPNG_06242	A0A423X054	A0A423WYK7	WD_REPEATS_REGION domain-containing protein.	Utp12 domain-containing protein.	0.999
VPNG_05703	VPNG_06385	A0A423X054	A0A423WZ40	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
VPNG_05703	VPNG_07557	A0A423X054	A0A423WDU6	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
VPNG_06242	VPNG_00136	A0A423WYK7	A0A423XNE9	Utp12 domain-containing protein.	Uncharacterized protein.	0.999
VPNG_06242	VPNG_05703	A0A423WYK7	A0A423X054	Utp12 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
VPNG_06242	VPNG_06385	A0A423WYK7	A0A423WZ40	Utp12 domain-containing protein.	Uncharacterized protein.	0.998
VPNG_06242	VPNG_07557	A0A423WYK7	A0A423WDU6	Utp12 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
VPNG_06385	VPNG_00136	A0A423WZ40	A0A423XNE9	Uncharacterized protein.	Uncharacterized protein.	0.999
VPNG_06385	VPNG_05703	A0A423WZ40	A0A423X054	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
VPNG_06385	VPNG_06242	A0A423WZ40	A0A423WYK7	Uncharacterized protein.	Utp12 domain-containing protein.	0.998
VPNG_06385	VPNG_07557	A0A423WZ40	A0A423WDU6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
VPNG_07557	VPNG_00136	A0A423WDU6	A0A423XNE9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
VPNG_07557	VPNG_05703	A0A423WDU6	A0A423X054	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
VPNG_07557	VPNG_06242	A0A423WDU6	A0A423WYK7	WD_REPEATS_REGION domain-containing protein.	Utp12 domain-containing protein.	0.998
VPNG_07557	VPNG_06385	A0A423WDU6	A0A423WZ40	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999