(23 nodes) Mixed, incl. beta-Lactam resistance, and Cupin 2, conserved barrel network (Salimicrobium jeotgali)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKG03350.1	Peptide ABC transporter substrate-binding protein. (558 aa)
	AKG03503.1	Hypothetical protein. (233 aa)
	AKG03741.1	Hypothetical protein. (296 aa)
	ANC70214.1	Hypothetical protein. (284 aa)
	AKG03988.1	Hypothetical protein. (341 aa)
	AKG04476.1	Hypothetical protein. (94 aa)
	AKG04477.1	Hypothetical protein. (106 aa)
	AKG04478.1	Hypothetical protein. (149 aa)
	AKG04688.1	Polysaccharide deacetylase. (282 aa)
	AKG04689.1	Hypothetical protein. (354 aa)
	AKG04690.1	Glycine/betaine ABC transporter permease; Belongs to the BCCT transporter (TC 2.A.15) family. (510 aa)
	AKG04914.1	LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (292 aa)
	AKG04915.1	Hypothetical protein. (345 aa)
	AKG04962.1	GTP-binding protein. (409 aa)
	AKG04963.1	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (311 aa)
	AKG04964.1	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (350 aa)
	AKG04965.1	Peptide ABC transporter permease. (376 aa)
	AKG04966.1	Peptide ABC transporter permease. (308 aa)
	AKG04967.1	Peptide ABC transporter substrate-binding protein. (558 aa)
	AKG04968.1	Hypothetical protein. (126 aa)
	trpS	tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (334 aa)
	AKG04970.1	Transcriptional regulator. (325 aa)
	APC65574.1	Hypothetical protein. (81 aa)

Your Current Organism:

Salimicrobium jeotgali

NCBI taxonomy Id: 1230341
Other names: JCM 19758, KACC 16972, S. jeotgali, Salimicrobium jeotgali Choi et al. 2014, Salimicrobium sp. MJ3, strain MJ3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKG03350.1	AKG03988.1	AAV35_000170	AAV35_003740	Peptide ABC transporter substrate-binding protein.	Hypothetical protein.	0.499
AKG03350.1	AKG04963.1	AAV35_000170	AAV35_009220	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.985
AKG03350.1	AKG04964.1	AAV35_000170	AAV35_009225	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.988
AKG03350.1	AKG04965.1	AAV35_000170	AAV35_009230	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.985
AKG03350.1	AKG04966.1	AAV35_000170	AAV35_009235	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.988
AKG03350.1	AKG04967.1	AAV35_000170	AAV35_009240	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter substrate-binding protein.	0.902
AKG03350.1	ANC70214.1	AAV35_000170	AAV35_003735	Peptide ABC transporter substrate-binding protein.	Hypothetical protein.	0.559
AKG03503.1	APC65574.1	AAV35_001025	AAV35_14140	Hypothetical protein.	Hypothetical protein.	0.554
AKG03741.1	AKG04688.1	AAV35_002345	AAV35_007665	Hypothetical protein.	Polysaccharide deacetylase.	0.554
AKG03741.1	APC65574.1	AAV35_002345	AAV35_14140	Hypothetical protein.	Hypothetical protein.	0.563
AKG03988.1	AKG03350.1	AAV35_003740	AAV35_000170	Hypothetical protein.	Peptide ABC transporter substrate-binding protein.	0.499
AKG03988.1	AKG04963.1	AAV35_003740	AAV35_009220	Hypothetical protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.577
AKG03988.1	AKG04964.1	AAV35_003740	AAV35_009225	Hypothetical protein.	Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.842
AKG03988.1	AKG04966.1	AAV35_003740	AAV35_009235	Hypothetical protein.	Peptide ABC transporter permease.	0.811
AKG03988.1	AKG04967.1	AAV35_003740	AAV35_009240	Hypothetical protein.	Peptide ABC transporter substrate-binding protein.	0.509
AKG03988.1	ANC70214.1	AAV35_003740	AAV35_003735	Hypothetical protein.	Hypothetical protein.	0.998
AKG04476.1	AKG04477.1	AAV35_006535	AAV35_006540	Hypothetical protein.	Hypothetical protein.	0.485
AKG04477.1	AKG04476.1	AAV35_006540	AAV35_006535	Hypothetical protein.	Hypothetical protein.	0.485
AKG04477.1	AKG04962.1	AAV35_006540	AAV35_009215	Hypothetical protein.	GTP-binding protein.	0.505
AKG04688.1	AKG03741.1	AAV35_007665	AAV35_002345	Polysaccharide deacetylase.	Hypothetical protein.	0.554