(10 nodes) Mixed, incl. TRAP transporter solute receptor DctP, and TRAP transporter large membrane protein DctM network (Salimicrobium jeotgali)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKG03662.1	TRAP transporter small permease protein. (185 aa)
	AKG03663.1	C4-dicarboxylate ABC transporter permease. (421 aa)
	AKG03664.1	C4-dicarboxylate ABC transporter. (358 aa)
	nanE	N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P). (233 aa)
	nanA	N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. (289 aa)
	AKG03806.1	Sialic acid-binding protein. (345 aa)
	AKG03807.1	TRAP transporter small permease protein. (154 aa)
	AKG03808.1	ABC transporter permease. (426 aa)
	AKG05676.1	RpiR family transcriptional regulator. (265 aa)
	AKG03810.1	Monooxygenase. (101 aa)

Your Current Organism:

Salimicrobium jeotgali

NCBI taxonomy Id: 1230341
Other names: JCM 19758, KACC 16972, S. jeotgali, Salimicrobium jeotgali Choi et al. 2014, Salimicrobium sp. MJ3, strain MJ3

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKG03662.1	AKG03663.1	AAV35_001910	AAV35_001915	TRAP transporter small permease protein.	C4-dicarboxylate ABC transporter permease.	0.973
AKG03662.1	AKG03664.1	AAV35_001910	AAV35_001920	TRAP transporter small permease protein.	C4-dicarboxylate ABC transporter.	0.936
AKG03662.1	AKG03806.1	AAV35_001910	AAV35_002740	TRAP transporter small permease protein.	Sialic acid-binding protein.	0.742
AKG03662.1	AKG03807.1	AAV35_001910	AAV35_002745	TRAP transporter small permease protein.	TRAP transporter small permease protein.	0.493
AKG03662.1	AKG03808.1	AAV35_001910	AAV35_002750	TRAP transporter small permease protein.	ABC transporter permease.	0.829
AKG03663.1	AKG03662.1	AAV35_001915	AAV35_001910	C4-dicarboxylate ABC transporter permease.	TRAP transporter small permease protein.	0.973
AKG03663.1	AKG03664.1	AAV35_001915	AAV35_001920	C4-dicarboxylate ABC transporter permease.	C4-dicarboxylate ABC transporter.	0.991
AKG03663.1	AKG03806.1	AAV35_001915	AAV35_002740	C4-dicarboxylate ABC transporter permease.	Sialic acid-binding protein.	0.829
AKG03663.1	AKG03807.1	AAV35_001915	AAV35_002745	C4-dicarboxylate ABC transporter permease.	TRAP transporter small permease protein.	0.929
AKG03664.1	AKG03662.1	AAV35_001920	AAV35_001910	C4-dicarboxylate ABC transporter.	TRAP transporter small permease protein.	0.936
AKG03664.1	AKG03663.1	AAV35_001920	AAV35_001915	C4-dicarboxylate ABC transporter.	C4-dicarboxylate ABC transporter permease.	0.991
AKG03664.1	AKG03807.1	AAV35_001920	AAV35_002745	C4-dicarboxylate ABC transporter.	TRAP transporter small permease protein.	0.865
AKG03664.1	AKG03808.1	AAV35_001920	AAV35_002750	C4-dicarboxylate ABC transporter.	ABC transporter permease.	0.834
AKG03806.1	AKG03662.1	AAV35_002740	AAV35_001910	Sialic acid-binding protein.	TRAP transporter small permease protein.	0.742
AKG03806.1	AKG03663.1	AAV35_002740	AAV35_001915	Sialic acid-binding protein.	C4-dicarboxylate ABC transporter permease.	0.829
AKG03806.1	AKG03807.1	AAV35_002740	AAV35_002745	Sialic acid-binding protein.	TRAP transporter small permease protein.	0.959
AKG03806.1	AKG03808.1	AAV35_002740	AAV35_002750	Sialic acid-binding protein.	ABC transporter permease.	0.944
AKG03806.1	AKG05676.1	AAV35_002740	AAV35_002760	Sialic acid-binding protein.	RpiR family transcriptional regulator.	0.551
AKG03806.1	nanA	AAV35_002740	AAV35_002735	Sialic acid-binding protein.	N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate.	0.729
AKG03806.1	nanE	AAV35_002740	AAV35_002730	Sialic acid-binding protein.	N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).	0.710