(4 nodes) Bacterial periplasmic substrate-binding proteins network (Salimicrobium jeotgali)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKG05123.1	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (292 aa)
	AKG03836.1	Hypothetical protein; Belongs to the bacterial solute-binding protein 3 family. (273 aa)
	AKG03543.2	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (273 aa)
	AKG03802.1	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (270 aa)

Your Current Organism:

Salimicrobium jeotgali

NCBI taxonomy Id: 1230341
Other names: JCM 19758, KACC 16972, S. jeotgali, Salimicrobium jeotgali Choi et al. 2014, Salimicrobium sp. MJ3, strain MJ3

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKG03543.2	AKG03802.1	AAV35_001255	AAV35_002715	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.915
AKG03543.2	AKG05123.1	AAV35_001255	AAV35_010225	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.903
AKG03802.1	AKG03543.2	AAV35_002715	AAV35_001255	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.915
AKG03802.1	AKG05123.1	AAV35_002715	AAV35_010225	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.914
AKG05123.1	AKG03543.2	AAV35_010225	AAV35_001255	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.903
AKG05123.1	AKG03802.1	AAV35_010225	AAV35_002715	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.914