(9 nodes) Nuclear-transcribed mRNA catabolic process, 3-5 exonucleolytic nonsense-mediated decay network (Malassezia sympodialis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MSYG_0528	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component). (272 aa)
	MSYG_0402	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p). (348 aa)
	MSYG_0960	Similar to S.cerevisiae protein RRP45 (Exosome non-catalytic core component). (350 aa)
	MSYG_1249	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component). (311 aa)
	MSYG_2315	Similar to S.cerevisiae protein RRP46 (Exosome non-catalytic core component). (277 aa)
	MSYG_2444	Similar to S.cerevisiae protein RRP45 (Exosome non-catalytic core component). (294 aa)
	MSYG_2531	Regulator of nonsense transcripts 2. (1030 aa)
	MSYG_3361	Similar to S.cerevisiae protein SKI3 (Ski complex component and TPR protein). (1527 aa)
	MSYG_0421	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase). (1217 aa)

Your Current Organism:

Malassezia sympodialis

NCBI taxonomy Id: 1230383
Other names: M. sympodialis ATCC 42132, Malassezia sympodialis ATCC 42132

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MSYG_0402	MSYG_0421	A0A1M8A159	A0A1M8A0W2	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	0.999
MSYG_0402	MSYG_0528	A0A1M8A159	A0A1M8A156	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.757
MSYG_0402	MSYG_0960	A0A1M8A159	A0A1M8A2C2	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	Similar to S.cerevisiae protein RRP45 (Exosome non-catalytic core component).	0.698
MSYG_0402	MSYG_1249	A0A1M8A159	A0A1M8A360	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.625
MSYG_0402	MSYG_2315	A0A1M8A159	A0A1M8A689	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	Similar to S.cerevisiae protein RRP46 (Exosome non-catalytic core component).	0.707
MSYG_0402	MSYG_2444	A0A1M8A159	A0A1M8A6K9	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	Similar to S.cerevisiae protein RRP45 (Exosome non-catalytic core component).	0.659
MSYG_0402	MSYG_3361	A0A1M8A159	A0A1M8A986	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	Similar to S.cerevisiae protein SKI3 (Ski complex component and TPR protein).	0.999
MSYG_0421	MSYG_0402	A0A1M8A0W2	A0A1M8A159	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	0.999
MSYG_0421	MSYG_0528	A0A1M8A0W2	A0A1M8A156	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.859
MSYG_0421	MSYG_0960	A0A1M8A0W2	A0A1M8A2C2	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	Similar to S.cerevisiae protein RRP45 (Exosome non-catalytic core component).	0.889
MSYG_0421	MSYG_1249	A0A1M8A0W2	A0A1M8A360	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.830
MSYG_0421	MSYG_2315	A0A1M8A0W2	A0A1M8A689	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	Similar to S.cerevisiae protein RRP46 (Exosome non-catalytic core component).	0.869
MSYG_0421	MSYG_2444	A0A1M8A0W2	A0A1M8A6K9	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	Similar to S.cerevisiae protein RRP45 (Exosome non-catalytic core component).	0.881
MSYG_0421	MSYG_3361	A0A1M8A0W2	A0A1M8A986	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	Similar to S.cerevisiae protein SKI3 (Ski complex component and TPR protein).	0.999
MSYG_0528	MSYG_0402	A0A1M8A156	A0A1M8A159	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein LST8 (Protein required for the transport of Gap1p).	0.757
MSYG_0528	MSYG_0421	A0A1M8A156	A0A1M8A0W2	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein SKI2 (Ski complex component and putative RNA helicase).	0.859
MSYG_0528	MSYG_0960	A0A1M8A156	A0A1M8A2C2	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein RRP45 (Exosome non-catalytic core component).	0.999
MSYG_0528	MSYG_1249	A0A1M8A156	A0A1M8A360	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.999
MSYG_0528	MSYG_2315	A0A1M8A156	A0A1M8A689	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein RRP46 (Exosome non-catalytic core component).	0.999
MSYG_0528	MSYG_2444	A0A1M8A156	A0A1M8A6K9	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein RRP45 (Exosome non-catalytic core component).	0.999