(6 nodes) CUT catabolic process network (Malassezia sympodialis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MSYG_4308	Similar to S.cerevisiae protein RRP4 (Exosome non-catalytic core component). (335 aa)
	MSY001_3179	Similar to S.cerevisiae protein RRP6 (Nuclear exosome exonuclease component). (813 aa)
	MSY001_2458	Similar to S.cerevisiae protein RRP40 (Exosome non-catalytic core component). (272 aa)
	MSYG_2209	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family. (994 aa)
	MSYG_1851	annotation not available (394 aa)
	MSYG_0528	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component). (272 aa)

Your Current Organism:

Malassezia sympodialis

NCBI taxonomy Id: 1230383
Other names: M. sympodialis ATCC 42132, Malassezia sympodialis ATCC 42132

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MSY001_2458	MSY001_3179	M5EBF9	M5ERL7	Similar to S.cerevisiae protein RRP40 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein RRP6 (Nuclear exosome exonuclease component).	0.406
MSY001_2458	MSYG_0528	M5EBF9	A0A1M8A156	Similar to S.cerevisiae protein RRP40 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.999
MSY001_2458	MSYG_2209	M5EBF9	A0A1M8A6C4	Similar to S.cerevisiae protein RRP40 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	0.996
MSY001_2458	MSYG_4308	M5EBF9	A0A1M8AC56	Similar to S.cerevisiae protein RRP40 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein RRP4 (Exosome non-catalytic core component).	0.999
MSY001_3179	MSY001_2458	M5ERL7	M5EBF9	Similar to S.cerevisiae protein RRP6 (Nuclear exosome exonuclease component).	Similar to S.cerevisiae protein RRP40 (Exosome non-catalytic core component).	0.406
MSY001_3179	MSYG_0528	M5ERL7	A0A1M8A156	Similar to S.cerevisiae protein RRP6 (Nuclear exosome exonuclease component).	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.406
MSY001_3179	MSYG_2209	M5ERL7	A0A1M8A6C4	Similar to S.cerevisiae protein RRP6 (Nuclear exosome exonuclease component).	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	0.971
MSY001_3179	MSYG_4308	M5ERL7	A0A1M8AC56	Similar to S.cerevisiae protein RRP6 (Nuclear exosome exonuclease component).	Similar to S.cerevisiae protein RRP4 (Exosome non-catalytic core component).	0.420
MSYG_0528	MSY001_2458	A0A1M8A156	M5EBF9	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein RRP40 (Exosome non-catalytic core component).	0.999
MSYG_0528	MSY001_3179	A0A1M8A156	M5ERL7	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein RRP6 (Nuclear exosome exonuclease component).	0.406
MSYG_0528	MSYG_1851	A0A1M8A156	A0A1M8A515	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	annotation not available	0.442
MSYG_0528	MSYG_2209	A0A1M8A156	A0A1M8A6C4	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	0.996
MSYG_0528	MSYG_4308	A0A1M8A156	A0A1M8AC56	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	Similar to S.cerevisiae protein RRP4 (Exosome non-catalytic core component).	0.999
MSYG_1851	MSYG_0528	A0A1M8A515	A0A1M8A156	annotation not available	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.442
MSYG_1851	MSYG_2209	A0A1M8A515	A0A1M8A6C4	annotation not available	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	0.431
MSYG_2209	MSY001_2458	A0A1M8A6C4	M5EBF9	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	Similar to S.cerevisiae protein RRP40 (Exosome non-catalytic core component).	0.996
MSYG_2209	MSY001_3179	A0A1M8A6C4	M5ERL7	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	Similar to S.cerevisiae protein RRP6 (Nuclear exosome exonuclease component).	0.971
MSYG_2209	MSYG_0528	A0A1M8A6C4	A0A1M8A156	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	Similar to S.cerevisiae protein SKI6 (Exosome non-catalytic core component).	0.996
MSYG_2209	MSYG_1851	A0A1M8A6C4	A0A1M8A515	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	annotation not available	0.431
MSYG_2209	MSYG_4308	A0A1M8A6C4	A0A1M8AC56	Similar to S.cerevisiae protein DIS3 (Exosome core complex catalytic subunit); Belongs to the RNR ribonuclease family.	Similar to S.cerevisiae protein RRP4 (Exosome non-catalytic core component).	0.995