(27 nodes) Mixed, incl. Tricarboxylic acid cycle, and acetyl-CoA metabolic process network (Microbacterium gorillae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826185_00212	Unannotated protein. (487 aa)
	GCA_000826185_00217	Unannotated protein. (439 aa)
	GCA_000826185_00228	Unannotated protein. (656 aa)
	GCA_000826185_00541	Unannotated protein. (458 aa)
	GCA_000826185_00542	Unannotated protein. (487 aa)
	GCA_000826185_00543	Unannotated protein. (456 aa)
	GCA_000826185_00559	Unannotated protein. (569 aa)
	GCA_000826185_00595	Unannotated protein. (701 aa)
	GCA_000826185_00596	Unannotated protein. (408 aa)
	GCA_000826185_00668	Unannotated protein. (575 aa)
	GCA_000826185_00669	Unannotated protein. (438 aa)
	GCA_000826185_00701	Unannotated protein. (1135 aa)
	GCA_000826185_00892	Unannotated protein. (945 aa)
	GCA_000826185_01228	Unannotated protein. (464 aa)
	GCA_000826185_01311	Unannotated protein. (431 aa)
	GCA_000826185_01445	Unannotated protein. (676 aa)
	GCA_000826185_02070	Unannotated protein. (740 aa)
	GCA_000826185_02360	Unannotated protein. (626 aa)
	GCA_000826185_02492	Unannotated protein. (395 aa)
	GCA_000826185_02590	Unannotated protein. (434 aa)
	GCA_000826185_02724	Unannotated protein. (449 aa)
	GCA_000826185_03165	Unannotated protein. (458 aa)
	GCA_000826185_03209	Unannotated protein. (437 aa)
	GCA_000826185_03239	Unannotated protein. (328 aa)
	GCA_000826185_03326	Unannotated protein. (646 aa)
	GCA_000826185_03438	Unannotated protein. (624 aa)
	GCA_000826185_03444	Unannotated protein. (933 aa)

Your Current Organism:

Microbacterium gorillae

NCBI taxonomy Id: 1231063
Other names: CSUR P207, DSM 26203, M. gorillae, Microbacterium sp. G3, strain G3

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826185_00212	GCA_000826185_00542	Unannotated protein.	Unannotated protein.	0.889
GCA_000826185_00212	GCA_000826185_00543	Unannotated protein.	Unannotated protein.	0.756
GCA_000826185_00212	GCA_000826185_00595	Unannotated protein.	Unannotated protein.	0.563
GCA_000826185_00212	GCA_000826185_00668	Unannotated protein.	Unannotated protein.	0.903
GCA_000826185_00212	GCA_000826185_00701	Unannotated protein.	Unannotated protein.	0.914
GCA_000826185_00212	GCA_000826185_01228	Unannotated protein.	Unannotated protein.	0.983
GCA_000826185_00212	GCA_000826185_01311	Unannotated protein.	Unannotated protein.	0.971
GCA_000826185_00212	GCA_000826185_02360	Unannotated protein.	Unannotated protein.	0.903
GCA_000826185_00212	GCA_000826185_02492	Unannotated protein.	Unannotated protein.	0.934
GCA_000826185_00212	GCA_000826185_03165	Unannotated protein.	Unannotated protein.	0.756
GCA_000826185_00212	GCA_000826185_03209	Unannotated protein.	Unannotated protein.	0.797
GCA_000826185_00212	GCA_000826185_03239	Unannotated protein.	Unannotated protein.	0.934
GCA_000826185_00212	GCA_000826185_03444	Unannotated protein.	Unannotated protein.	0.569
GCA_000826185_00217	GCA_000826185_00228	Unannotated protein.	Unannotated protein.	0.482
GCA_000826185_00217	GCA_000826185_00559	Unannotated protein.	Unannotated protein.	0.620
GCA_000826185_00217	GCA_000826185_00595	Unannotated protein.	Unannotated protein.	0.502
GCA_000826185_00217	GCA_000826185_00596	Unannotated protein.	Unannotated protein.	0.667
GCA_000826185_00217	GCA_000826185_00668	Unannotated protein.	Unannotated protein.	0.469
GCA_000826185_00217	GCA_000826185_00701	Unannotated protein.	Unannotated protein.	0.885
GCA_000826185_00217	GCA_000826185_01445	Unannotated protein.	Unannotated protein.	0.482