(22 nodes) Active ion transmembrane transporter activity network (Microbacterium gorillae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826185_00749	Unannotated protein. (304 aa)
	GCA_000826185_00186	Unannotated protein. (505 aa)
	GCA_000826185_00475	Unannotated protein. (547 aa)
	GCA_000826185_00477	Unannotated protein. (481 aa)
	GCA_000826185_00529	Unannotated protein. (739 aa)
	GCA_000826185_00750	Unannotated protein. (578 aa)
	GCA_000826185_00751	Unannotated protein. (138 aa)
	GCA_000826185_01013	Unannotated protein. (371 aa)
	GCA_000826185_01463	Unannotated protein. (406 aa)
	GCA_000826185_01668	Unannotated protein. (559 aa)
	GCA_000826185_01670	Unannotated protein. (268 aa)
	GCA_000826185_01671	Unannotated protein. (212 aa)
	GCA_000826185_02108	Unannotated protein. (259 aa)
	GCA_000826185_02415	Unannotated protein. (343 aa)
	GCA_000826185_02666	Unannotated protein. (364 aa)
	GCA_000826185_02768	Unannotated protein. (102 aa)
	GCA_000826185_02827	Unannotated protein. (342 aa)
	GCA_000826185_03023	Unannotated protein. (558 aa)
	GCA_000826185_03024	Unannotated protein. (709 aa)
	GCA_000826185_03025	Unannotated protein. (191 aa)
	GCA_000826185_03122	Unannotated protein. (122 aa)
	GCA_000826185_03404	Unannotated protein. (756 aa)

Your Current Organism:

Microbacterium gorillae

NCBI taxonomy Id: 1231063
Other names: CSUR P207, DSM 26203, M. gorillae, Microbacterium sp. G3, strain G3

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826185_00186	GCA_000826185_00475	Unannotated protein.	Unannotated protein.	0.663
GCA_000826185_00186	GCA_000826185_00477	Unannotated protein.	Unannotated protein.	0.687
GCA_000826185_00186	GCA_000826185_01668	Unannotated protein.	Unannotated protein.	0.983
GCA_000826185_00475	GCA_000826185_00186	Unannotated protein.	Unannotated protein.	0.663
GCA_000826185_00475	GCA_000826185_00477	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00475	GCA_000826185_00749	Unannotated protein.	Unannotated protein.	0.754
GCA_000826185_00475	GCA_000826185_00750	Unannotated protein.	Unannotated protein.	0.900
GCA_000826185_00475	GCA_000826185_01668	Unannotated protein.	Unannotated protein.	0.800
GCA_000826185_00475	GCA_000826185_01671	Unannotated protein.	Unannotated protein.	0.690
GCA_000826185_00477	GCA_000826185_00186	Unannotated protein.	Unannotated protein.	0.687
GCA_000826185_00477	GCA_000826185_00475	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00477	GCA_000826185_00529	Unannotated protein.	Unannotated protein.	0.628
GCA_000826185_00477	GCA_000826185_00749	Unannotated protein.	Unannotated protein.	0.761
GCA_000826185_00477	GCA_000826185_00750	Unannotated protein.	Unannotated protein.	0.739
GCA_000826185_00477	GCA_000826185_00751	Unannotated protein.	Unannotated protein.	0.532
GCA_000826185_00477	GCA_000826185_01013	Unannotated protein.	Unannotated protein.	0.634
GCA_000826185_00477	GCA_000826185_01668	Unannotated protein.	Unannotated protein.	0.922
GCA_000826185_00477	GCA_000826185_01671	Unannotated protein.	Unannotated protein.	0.669
GCA_000826185_00529	GCA_000826185_00477	Unannotated protein.	Unannotated protein.	0.628
GCA_000826185_00749	GCA_000826185_00475	Unannotated protein.	Unannotated protein.	0.754