(32 nodes) Electron transport chain network (Microbacterium gorillae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826185_00749	Unannotated protein. (304 aa)
	GCA_000826185_00750	Unannotated protein. (578 aa)
	GCA_000826185_00751	Unannotated protein. (138 aa)
	GCA_000826185_01309	Unannotated protein. (104 aa)
	GCA_000826185_01321	Unannotated protein. (250 aa)
	GCA_000826185_01668	Unannotated protein. (559 aa)
	GCA_000826185_01669	Unannotated protein. (358 aa)
	GCA_000826185_01670	Unannotated protein. (268 aa)
	GCA_000826185_01671	Unannotated protein. (212 aa)
	GCA_000826185_01782	Unannotated protein. (141 aa)
	GCA_000826185_01784	Unannotated protein. (600 aa)
	GCA_000826185_01785	Unannotated protein. (253 aa)
	GCA_000826185_01981	Unannotated protein. (348 aa)
	GCA_000826185_02028	Unannotated protein. (96 aa)
	GCA_000826185_02399	Unannotated protein. (452 aa)
	GCA_000826185_02481	Unannotated protein. (353 aa)
	GCA_000826185_02482	Unannotated protein. (327 aa)
	GCA_000826185_02483	Unannotated protein. (258 aa)
	GCA_000826185_02507	Unannotated protein. (447 aa)
	GCA_000826185_02558	Unannotated protein. (121 aa)
	GCA_000826185_02656	Unannotated protein. (63 aa)
	GCA_000826185_02665	Unannotated protein. (410 aa)
	GCA_000826185_02856	Unannotated protein. (154 aa)
	GCA_000826185_02857	Unannotated protein. (398 aa)
	GCA_000826185_02907	Unannotated protein. (150 aa)
	GCA_000826185_02927	Unannotated protein. (73 aa)
	GCA_000826185_02928	Unannotated protein. (379 aa)
	GCA_000826185_03125	Unannotated protein. (520 aa)
	GCA_000826185_03282	Unannotated protein. (107 aa)
	GCA_000826185_03283	Unannotated protein. (420 aa)
	GCA_000826185_00582	Unannotated protein. (336 aa)
	GCA_000826185_00583	Unannotated protein. (470 aa)

Your Current Organism:

Microbacterium gorillae

NCBI taxonomy Id: 1231063
Other names: CSUR P207, DSM 26203, M. gorillae, Microbacterium sp. G3, strain G3

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826185_00582	GCA_000826185_00583	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00582	GCA_000826185_00749	Unannotated protein.	Unannotated protein.	0.803
GCA_000826185_00582	GCA_000826185_00750	Unannotated protein.	Unannotated protein.	0.857
GCA_000826185_00582	GCA_000826185_01668	Unannotated protein.	Unannotated protein.	0.835
GCA_000826185_00582	GCA_000826185_01670	Unannotated protein.	Unannotated protein.	0.720
GCA_000826185_00582	GCA_000826185_01671	Unannotated protein.	Unannotated protein.	0.850
GCA_000826185_00582	GCA_000826185_01782	Unannotated protein.	Unannotated protein.	0.655
GCA_000826185_00582	GCA_000826185_01784	Unannotated protein.	Unannotated protein.	0.715
GCA_000826185_00582	GCA_000826185_01785	Unannotated protein.	Unannotated protein.	0.626
GCA_000826185_00583	GCA_000826185_00582	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00583	GCA_000826185_00749	Unannotated protein.	Unannotated protein.	0.779
GCA_000826185_00583	GCA_000826185_00750	Unannotated protein.	Unannotated protein.	0.854
GCA_000826185_00583	GCA_000826185_01668	Unannotated protein.	Unannotated protein.	0.878
GCA_000826185_00583	GCA_000826185_01669	Unannotated protein.	Unannotated protein.	0.732
GCA_000826185_00583	GCA_000826185_01670	Unannotated protein.	Unannotated protein.	0.839
GCA_000826185_00583	GCA_000826185_01671	Unannotated protein.	Unannotated protein.	0.850
GCA_000826185_00583	GCA_000826185_01782	Unannotated protein.	Unannotated protein.	0.572
GCA_000826185_00583	GCA_000826185_01784	Unannotated protein.	Unannotated protein.	0.712
GCA_000826185_00583	GCA_000826185_01785	Unannotated protein.	Unannotated protein.	0.630
GCA_000826185_00749	GCA_000826185_00582	Unannotated protein.	Unannotated protein.	0.803