(28 nodes) Cellular respiration network (Microbacterium gorillae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826185_02481	Unannotated protein. (353 aa)
	GCA_000826185_00212	Unannotated protein. (487 aa)
	GCA_000826185_00259	Unannotated protein. (487 aa)
	GCA_000826185_00281	Unannotated protein. (160 aa)
	GCA_000826185_00410	Unannotated protein. (1235 aa)
	GCA_000826185_00582	Unannotated protein. (336 aa)
	GCA_000826185_00583	Unannotated protein. (470 aa)
	GCA_000826185_00668	Unannotated protein. (575 aa)
	GCA_000826185_00669	Unannotated protein. (438 aa)
	GCA_000826185_00750	Unannotated protein. (578 aa)
	GCA_000826185_00868	Unannotated protein. (583 aa)
	GCA_000826185_00892	Unannotated protein. (945 aa)
	GCA_000826185_01228	Unannotated protein. (464 aa)
	GCA_000826185_01311	Unannotated protein. (431 aa)
	GCA_000826185_01668	Unannotated protein. (559 aa)
	GCA_000826185_01671	Unannotated protein. (212 aa)
	GCA_000826185_01782	Unannotated protein. (141 aa)
	GCA_000826185_01783	Unannotated protein. (149 aa)
	GCA_000826185_01785	Unannotated protein. (253 aa)
	GCA_000826185_02028	Unannotated protein. (96 aa)
	GCA_000826185_02070	Unannotated protein. (740 aa)
	GCA_000826185_02399	Unannotated protein. (452 aa)
	GCA_000826185_02460	Unannotated protein. (300 aa)
	GCA_000826185_02461	Unannotated protein. (389 aa)
	GCA_000826185_02492	Unannotated protein. (395 aa)
	GCA_000826185_02494	Unannotated protein. (508 aa)
	GCA_000826185_03125	Unannotated protein. (520 aa)
	GCA_000826185_03239	Unannotated protein. (328 aa)

Your Current Organism:

Microbacterium gorillae

NCBI taxonomy Id: 1231063
Other names: CSUR P207, DSM 26203, M. gorillae, Microbacterium sp. G3, strain G3

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826185_00212	GCA_000826185_00668	Unannotated protein.	Unannotated protein.	0.903
GCA_000826185_00212	GCA_000826185_01228	Unannotated protein.	Unannotated protein.	0.983
GCA_000826185_00212	GCA_000826185_01311	Unannotated protein.	Unannotated protein.	0.971
GCA_000826185_00212	GCA_000826185_02460	Unannotated protein.	Unannotated protein.	0.521
GCA_000826185_00212	GCA_000826185_02461	Unannotated protein.	Unannotated protein.	0.542
GCA_000826185_00212	GCA_000826185_02492	Unannotated protein.	Unannotated protein.	0.934
GCA_000826185_00212	GCA_000826185_03239	Unannotated protein.	Unannotated protein.	0.934
GCA_000826185_00259	GCA_000826185_00410	Unannotated protein.	Unannotated protein.	0.894
GCA_000826185_00259	GCA_000826185_01228	Unannotated protein.	Unannotated protein.	0.523
GCA_000826185_00259	GCA_000826185_01311	Unannotated protein.	Unannotated protein.	0.894
GCA_000826185_00259	GCA_000826185_01782	Unannotated protein.	Unannotated protein.	0.610
GCA_000826185_00259	GCA_000826185_01783	Unannotated protein.	Unannotated protein.	0.426
GCA_000826185_00259	GCA_000826185_01785	Unannotated protein.	Unannotated protein.	0.508
GCA_000826185_00259	GCA_000826185_02492	Unannotated protein.	Unannotated protein.	0.752
GCA_000826185_00259	GCA_000826185_03239	Unannotated protein.	Unannotated protein.	0.883
GCA_000826185_00410	GCA_000826185_00259	Unannotated protein.	Unannotated protein.	0.894
GCA_000826185_00410	GCA_000826185_00668	Unannotated protein.	Unannotated protein.	0.503
GCA_000826185_00410	GCA_000826185_00669	Unannotated protein.	Unannotated protein.	0.551
GCA_000826185_00410	GCA_000826185_00750	Unannotated protein.	Unannotated protein.	0.797
GCA_000826185_00410	GCA_000826185_00868	Unannotated protein.	Unannotated protein.	0.993