STRINGSTRING
GCA_000613385_01461 GCA_000613385_01461 GCA_000613385_03087 GCA_000613385_03087 clpX clpX mutL mutL GCA_000613385_03160 GCA_000613385_03160 D7Y07_04265 D7Y07_04265 lon lon uvrB uvrB uvrA-2 uvrA-2 GCA_000613385_03964 GCA_000613385_03964 GCA_000613385_04098 GCA_000613385_04098 clpB clpB GCA_000613385_04313 GCA_000613385_04313 GCA_000613385_04368 GCA_000613385_04368 GCA_000613385_04369 GCA_000613385_04369 mutS2 mutS2 D7Y07_09905 D7Y07_09905 GCA_000613385_04845 GCA_000613385_04845 D7Y07_19295 D7Y07_19295 GCA_000613385_01946 GCA_000613385_01946 GCA_000613385_01947 GCA_000613385_01947 ruvA ruvA ychF ychF htpG htpG cadA cadA GCA_000613385_01611 GCA_000613385_01611 GCA_000613385_01610 GCA_000613385_01610 D7Y07_17710 D7Y07_17710 GCA_000613385_01590 GCA_000613385_01590 GCA_000613385_01506 GCA_000613385_01506 D7Y07_10275 D7Y07_10275 GCA_000613385_01460 GCA_000613385_01460 GCA_000613385_01060 GCA_000613385_01060 D7Y07_16040 D7Y07_16040 D7Y07_17950 D7Y07_17950 D7Y07_18020 D7Y07_18020 GCA_000613385_00864 GCA_000613385_00864 GCA_000613385_00813 GCA_000613385_00813 GCA_000613385_00812 GCA_000613385_00812 D7Y07_18135 D7Y07_18135 D7Y07_18870 D7Y07_18870 GCA_000613385_00566 GCA_000613385_00566 GCA_000613385_00565 GCA_000613385_00565 GCA_000613385_00411 GCA_000613385_00411 GCA_000613385_00250 GCA_000613385_00250 GCA_000613385_00142 GCA_000613385_00142 GCA_000613385_00092 GCA_000613385_00092 GCA_000613385_02062 GCA_000613385_02062 D7Y07_12455 D7Y07_12455 GCA_000613385_02064 GCA_000613385_02064 D7Y07_16665 D7Y07_16665 GCA_000613385_02128 GCA_000613385_02128 D7Y07_08380 D7Y07_08380 uvrA uvrA ruvB ruvB recG recG D7Y07_02655 D7Y07_02655 GCA_000613385_02685 GCA_000613385_02685 GCA_000613385_02686 GCA_000613385_02686 ftsH ftsH D7Y07_06680 D7Y07_06680 D7Y07_06625 D7Y07_06625 GCA_000613385_02848 GCA_000613385_02848 GCA_000613385_02849 GCA_000613385_02849 GCA_000613385_02892 GCA_000613385_02892 D7Y07_07815 D7Y07_07815 dnaB dnaB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000613385_01461Unannotated protein. (111 aa)
GCA_000613385_03087Unannotated protein. (515 aa)
clpXUnannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (414 aa)
mutLUnannotated protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (430 aa)
GCA_000613385_03160Unannotated protein. (211 aa)
D7Y07_04265Unannotated protein. (103 aa)
lonUnannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (822 aa)
uvrBUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the [...] (677 aa)
uvrA-2Unannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (923 aa)
GCA_000613385_03964Unannotated protein. (485 aa)
GCA_000613385_04098Unannotated protein. (339 aa)
clpBUnannotated protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (523 aa)
GCA_000613385_04313Unannotated protein. (1066 aa)
GCA_000613385_04368Unannotated protein. (423 aa)
GCA_000613385_04369Unannotated protein. (205 aa)
mutS2Unannotated protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (833 aa)
D7Y07_09905Unannotated protein. (320 aa)
GCA_000613385_04845Unannotated protein. (265 aa)
D7Y07_19295Unannotated protein. (524 aa)
GCA_000613385_01946Unannotated protein. (910 aa)
GCA_000613385_01947Unannotated protein. (457 aa)
ruvAUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (202 aa)
ychFUnannotated protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (367 aa)
htpGUnannotated protein. (681 aa)
cadAUnannotated protein. (648 aa)
GCA_000613385_01611Unannotated protein. (109 aa)
GCA_000613385_01610Unannotated protein. (231 aa)
D7Y07_17710Unannotated protein. (586 aa)
GCA_000613385_01590Unannotated protein. (158 aa)
GCA_000613385_01506Unannotated protein. (704 aa)
D7Y07_10275Unannotated protein. (354 aa)
GCA_000613385_01460Unannotated protein. (316 aa)
GCA_000613385_01060Unannotated protein. (49 aa)
D7Y07_16040Unannotated protein. (271 aa)
D7Y07_17950Unannotated protein. (889 aa)
D7Y07_18020Unannotated protein. (791 aa)
GCA_000613385_00864Unannotated protein. (681 aa)
GCA_000613385_00813Unannotated protein. (128 aa)
GCA_000613385_00812Unannotated protein. (263 aa)
D7Y07_18135Unannotated protein. (493 aa)
D7Y07_18870Unannotated protein. (368 aa)
GCA_000613385_00566Unannotated protein. (423 aa)
GCA_000613385_00565Unannotated protein. (237 aa)
GCA_000613385_00411Unannotated protein. (129 aa)
GCA_000613385_00250Unannotated protein. (716 aa)
GCA_000613385_00142Unannotated protein. (710 aa)
GCA_000613385_00092Unannotated protein. (370 aa)
GCA_000613385_02062Unannotated protein. (211 aa)
D7Y07_12455Unannotated protein; Belongs to the ClpA/ClpB family. (350 aa)
GCA_000613385_02064Unannotated protein. (273 aa)
D7Y07_16665Unannotated protein. (331 aa)
GCA_000613385_02128Unannotated protein. (442 aa)
D7Y07_08380Unannotated protein. (600 aa)
uvrAUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (841 aa)
ruvBUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (344 aa)
recGUnannotated protein; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (640 aa)
D7Y07_02655Unannotated protein. (285 aa)
GCA_000613385_02685Unannotated protein. (185 aa)
GCA_000613385_02686Unannotated protein. (112 aa)
ftsHUnannotated protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (407 aa)
D7Y07_06680Unannotated protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (348 aa)
D7Y07_06625Unannotated protein. (359 aa)
GCA_000613385_02848Unannotated protein. (630 aa)
GCA_000613385_02849Unannotated protein. (422 aa)
GCA_000613385_02892Unannotated protein. (163 aa)
D7Y07_07815Unannotated protein. (183 aa)
dnaBUnannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (522 aa)
Your Current Organism:
Bacteroides acidifaciens
NCBI taxonomy Id: 1235814
Other names: B. acidifaciens JCM 10556, Bacteroides acidifaciens JCM 10556
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.