STRINGSTRING
rpl11 rpl11 rpl1 rpl1 rpl7ae rpl7ae rps28e rps28e rps2 rps2 rpl44e rpl44e rpl37ae rpl37ae rps7 rps7 rps4 rps4 rpl40e rpl40e rps19e rps19e rpl37e rpl37e rpl15 rpl15 rpl30 rpl30 rpl6 rpl6 rps8 rps8 rps17 rps17 rps3 rps3 rps19p rps19p rpl13 rpl13 AGI86202.1 AGI86202.1 rpl21e rpl21e AGI86265.1 AGI86265.1 rps17e rps17e rpl18a rpl18a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl11LSU ribosomal protein L12e (L11p); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (158 aa)
rpl1LSU ribosomal protein L10Ae (L1p); Binds directly to 23S rRNA. Probably involved in E site tRNA release. (205 aa)
rpl7aeLSU ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (121 aa)
rps28eSSU ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (71 aa)
rps2SSU ribosomal protein SAe (S2p); Belongs to the universal ribosomal protein uS2 family. (208 aa)
rpl44eLSU ribosomal protein L44e; Binds to the 23S rRNA. (92 aa)
rpl37aeLSU ribosomal protein L37Ae; Binds to the 23S rRNA. (101 aa)
rps7SSU ribosomal protein S5e (S7p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (190 aa)
rps4SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (216 aa)
rpl40eLSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)
rps19eSSU ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (143 aa)
rpl37eLSU ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (56 aa)
rpl15LSU ribosomal protein L27Ae (L15p); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (140 aa)
rpl30LSU ribosomal protein L7e (L30p). (155 aa)
rpl6LSU ribosomal protein L9e (L6p); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (185 aa)
rps8SSU ribosomal protein S15Ae (S8p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (129 aa)
rps17SSU ribosomal protein S11e (S17p); One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (113 aa)
rps3SSU ribosomal protein S3e (S3p); Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (234 aa)
rps19pSSU ribosomal protein S15e (S19p); Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (153 aa)
rpl13LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (141 aa)
AGI86202.1LSU ribosomal protein L18e. (78 aa)
rpl21eLSU ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
AGI86265.1LSU ribosomal protein L15e. (207 aa)
rps17eSSU ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. (66 aa)
rpl18aHypothetical protein. (74 aa)
Your Current Organism:
Methanomethylophilus alvus
NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.