STRINGSTRING
AGI84758.1 AGI84758.1 AGI84761.1 AGI84761.1 AGI84791.1 AGI84791.1 rpl10 rpl10 rpl12 rpl12 priL priL AGI84823.1 AGI84823.1 AGI84848.1 AGI84848.1 rps28e rps28e rpl24e rpl24e rps6e rps6e AGI84892.1 AGI84892.1 rps2 rps2 AGI84943.1 AGI84943.1 AGI84985.1 AGI84985.1 rpl44e rpl44e AGI85041.1 AGI85041.1 rpl37ae rpl37ae rps10 rps10 rps4 rps4 AGI85100.1 AGI85100.1 AGI85124.1 AGI85124.1 AGI85131.1 AGI85131.1 rps24e rps24e AGI85201.1 AGI85201.1 rpl40e rpl40e AGI85249.1 AGI85249.1 AGI85250.1 AGI85250.1 AGI85278.1 AGI85278.1 AGI85341.1 AGI85341.1 AGI85409.1 AGI85409.1 rps19e rps19e rpl31e rpl31e rfcL rfcL pdxS pdxS AGI85594.1 AGI85594.1 AGI85662.1 AGI85662.1 AGI85720.1 AGI85720.1 dnaG dnaG AGI85730.1 AGI85730.1 AGI85740.1 AGI85740.1 AGI85741.1 AGI85741.1 AGI85775.1 AGI85775.1 rfcS rfcS AGI85784.1 AGI85784.1 AGI85785.1 AGI85785.1 AGI85812.1 AGI85812.1 AGI85884.2 AGI85884.2 AGI85945.1 AGI85945.1 AGI85980.1 AGI85980.1 top6A top6A AGI86031.1 AGI86031.1 AGI86044.1 AGI86044.1 rps3ae rps3ae rps5 rps5 rpl18 rpl18 rpl19e rpl19e rpl32e rpl32e rpl6 rpl6 rps4e rps4e rps17 rps17 rpl29 rpl29 rps3 rps3 rps19p rps19p rps9 rps9 AGI86239.1 AGI86239.1 rpl21e rpl21e AGI86265.1 AGI86265.1 AGI86271.1 AGI86271.1 AGI86272.1 AGI86272.1 flpA flpA AGI86298.1 AGI86298.1 rps17e rps17e AGI86358.1 AGI86358.1 priS priS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AGI84758.1Origin of replication recognition protein / Cell division control protein 6 Cdc6/Orc1; Involved in regulation of DNA replication. (414 aa)
AGI84761.1dCMP deaminase; Late competence protein ComEB. (165 aa)
AGI84791.1Hypothetical protein. (85 aa)
rpl10Ribosomal protein Lp0; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (334 aa)
rpl12LSU ribosomal protein L12a (P1/P2); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (96 aa)
priLPrimase large subunit (PriL); Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. (344 aa)
AGI84823.1CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. (319 aa)
AGI84848.1Bi-functional transferase/deacetylase. (295 aa)
rps28eSSU ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (71 aa)
rpl24eLSU ribosomal protein L24e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family. (77 aa)
rps6eSSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (133 aa)
AGI84892.1Toprim subdomain protein. (133 aa)
rps2SSU ribosomal protein SAe (S2p); Belongs to the universal ribosomal protein uS2 family. (208 aa)
AGI84943.1Ribulose-1,5-bisphosphate carboxylase, Type III. (412 aa)
AGI84985.1rRNA biogenesis protein Nop5/Nop56. (366 aa)
rpl44eLSU ribosomal protein L44e; Binds to the 23S rRNA. (92 aa)
AGI85041.1Hypothetical protein. (333 aa)
rpl37aeLSU ribosomal protein L37Ae; Binds to the 23S rRNA. (101 aa)
rps10SSU ribosomal protein S20e (S10p); Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (104 aa)
rps4SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (216 aa)
AGI85100.1GTP-binding protein, gtp1/obg family. (332 aa)
AGI85124.1Hypothetical protein. (111 aa)
AGI85131.1Putative dNTP triphosphohydrolase, Archaeal subgroup. (437 aa)
rps24eSSU ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (106 aa)
AGI85201.1Putative esterase. (315 aa)
rpl40eLSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)
AGI85249.1Exonuclease SbcD. (415 aa)
AGI85250.1Exonuclease SbcC. (1047 aa)
AGI85278.1N-acetylneuraminate synthase. (292 aa)
AGI85341.1Thiazole biosynthesis protein ThiG. (255 aa)
AGI85409.1Hypothetical protein. (1499 aa)
rps19eSSU ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (143 aa)
rpl31eLSU ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (87 aa)
rfcLReplication factor C large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. (523 aa)
pdxSPyridoxine biosynthesis glutamine amidotransferase, synthase subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (291 aa)
AGI85594.1Hypothetical protein. (316 aa)
AGI85662.1Cell division protein FtsZ; Belongs to the FtsZ family. (235 aa)
AGI85720.1DNA double-strand break repair protein Mre11. (398 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. (595 aa)
AGI85730.1Protein of unknown function DUF124. (227 aa)
AGI85740.1Hypothetical protein. (125 aa)
AGI85741.1Hypothetical protein. (115 aa)
AGI85775.1Origin of replication recognition protein / Cell division control protein 6 Cdc6/Orc1; Involved in regulation of DNA replication. (393 aa)
rfcSReplication factor C small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. (318 aa)
AGI85784.1Hypothetical protein. (495 aa)
AGI85785.1Hypothetical protein. (219 aa)
AGI85812.1Hypothetical protein. (305 aa)
AGI85884.2Endonuclease III. (208 aa)
AGI85945.1Archaeal ATPase, fused to C-terminal DUF234 domain protein. (448 aa)
AGI85980.1Archaeal ATPase, fused to C-terminal DUF234 domain protein. (451 aa)
top6ADNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (362 aa)
AGI86031.1Exonuclease SBCC. (694 aa)
AGI86044.1Archaeal ATPase, fused to C-terminal DUF234 domain protein. (452 aa)
rps3aeSSU ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. (260 aa)
rps5SSU ribosomal protein S2e (S5p); With S4 and S12 plays an important role in translational accuracy. (229 aa)
rpl18LSU ribosomal protein L5e (L18p); This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (166 aa)
rpl19eLSU ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (153 aa)
rpl32eLSU ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family. (235 aa)
rpl6LSU ribosomal protein L9e (L6p); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (185 aa)
rps4eSSU ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family. (235 aa)
rps17SSU ribosomal protein S11e (S17p); One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (113 aa)
rpl29LSU ribosomal protein L35e (L29p); Belongs to the universal ribosomal protein uL29 family. (69 aa)
rps3SSU ribosomal protein S3e (S3p); Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (234 aa)
rps19pSSU ribosomal protein S15e (S19p); Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (153 aa)
rps9SSU ribosomal protein S16e (S9p); Belongs to the universal ribosomal protein uS9 family. (132 aa)
AGI86239.1Hypothetical protein. (377 aa)
rpl21eLSU ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
AGI86265.1LSU ribosomal protein L15e. (207 aa)
AGI86271.1ATPase, AAA family. (466 aa)
AGI86272.1ATPase, AAA family. (448 aa)
flpAFibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (219 aa)
AGI86298.1Hypothetical protein. (1480 aa)
rps17eSSU ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. (66 aa)
AGI86358.1LSU ribosomal protein L30e. (94 aa)
priSPrimase small subunit (PriS); Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesi [...] (423 aa)
Your Current Organism:
Methanomethylophilus alvus
NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201
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