STRINGSTRING
SAI65976.1 SAI65976.1 SAI65979.1 SAI65979.1 SAI66078.1 SAI66078.1 SAI66083.1 SAI66083.1 SAI66115.1 SAI66115.1 selU_1 selU_1 SAI66285.1 SAI66285.1 SAI66329.1 SAI66329.1 lolA lolA SAI66398.1 SAI66398.1 omlA omlA phaP phaP yfaY yfaY SAI66609.1 SAI66609.1 SAI66611.1 SAI66611.1 SAI66615.1 SAI66615.1 SAI66617.1 SAI66617.1 SAI66619.1 SAI66619.1 SAI66620.1 SAI66620.1 SAI66622.1 SAI66622.1 SAI66623.1 SAI66623.1 ompQ_1 ompQ_1 amiC_1 amiC_1 imp imp mnmC_1 mnmC_1 mnmC_2 mnmC_2 SAI67008.1 SAI67008.1 SAI67055.1 SAI67055.1 SAI67069.1 SAI67069.1 zapA zapA SAI67072.1 SAI67072.1 rppH rppH bpH1 bpH1 slyB slyB SAI67398.1 SAI67398.1 prmA prmA SAI67413.1 SAI67413.1 rnb rnb lptG lptG SAI67562.1 SAI67562.1 SAI67625.1 SAI67625.1 SAI67656.1 SAI67656.1 SAI67693.1 SAI67693.1 SAI67721.1 SAI67721.1 lptA lptA lptB_2 lptB_2 SAI67805.1 SAI67805.1 SAI67875.1 SAI67875.1 SAI67886.1 SAI67886.1 trxB_2 trxB_2 SAI67933.1 SAI67933.1 SAI67974.1 SAI67974.1 SAI68001.1 SAI68001.1 SAI68007.1 SAI68007.1 ssp ssp sspB sspB SAI68198.1 SAI68198.1 SAI68200.1 SAI68200.1 SAI68203.1 SAI68203.1 ccsB ccsB SAI68494.1 SAI68494.1 yajR yajR SAI68667.1 SAI68667.1 SAI68678.1 SAI68678.1 slt slt cca cca SAI68681.1 SAI68681.1 tam_2 tam_2 ampD ampD SAI69095.1 SAI69095.1 ypjD ypjD SAI69403.1 SAI69403.1 mrp mrp SAI69407.1 SAI69407.1 SAI69409.1 SAI69409.1 yhfA yhfA SAI69543.1 SAI69543.1 SAI69586.1 SAI69586.1 SAI69588.1 SAI69588.1 SAI70329.1 SAI70329.1 patA patA SAI70336.1 SAI70336.1 SAI70339.1 SAI70339.1 SAI70811.1 SAI70811.1 SAI70826.1 SAI70826.1 lplT lplT SAI70841.1 SAI70841.1 dnaL dnaL lptF lptF SAI71115.1 SAI71115.1 comL comL SAI71320.1 SAI71320.1 SAI71390.1 SAI71390.1 mgsA mgsA recJ recJ SAI71537.1 SAI71537.1 lolE lolE lolD_3 lolD_3 yjjV yjjV ybcJ ybcJ SAI71549.1 SAI71549.1 SAI72038.1 SAI72038.1 bamA bamA rluF rluF yqiC yqiC SAI73371.1 SAI73371.1 SAI73458.1 SAI73458.1 SAI73476.1 SAI73476.1 bcp_2 bcp_2 ybeZ_2 ybeZ_2 SAI73643.1 SAI73643.1 SAI73654.1 SAI73654.1 SAI73778.1 SAI73778.1 SAI74033.1 SAI74033.1 gpt gpt yfgL yfgL SAI74139.1 SAI74139.1 SAI74192.1 SAI74192.1 norM norM SAI74272.1 SAI74272.1 speE speE lptE lptE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SAI65976.1Protein of uncharacterised function (DUF2863). (401 aa)
SAI65979.1Outer membrane porin protein. (334 aa)
SAI66078.1Cupin superfamily protein. (395 aa)
SAI66083.1Lipoprotein. (373 aa)
SAI66115.1Phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. (428 aa)
selU_1tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain. (367 aa)
SAI66285.1Uncharacterized conserved protein. (528 aa)
SAI66329.1Lipoprotein. (172 aa)
lolAOuter-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (209 aa)
SAI66398.1Domain of uncharacterised function (DUF1841). (141 aa)
omlAOuter membrane lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (179 aa)
phaPGranule-associated protein (phasin). (191 aa)
yfaYCinA-like protein. (270 aa)
SAI66609.1Membrane protein. (269 aa)
SAI66611.1Thioredoxin. (132 aa)
SAI66615.1Membrane protein. (109 aa)
SAI66617.1Membrane protein. (250 aa)
SAI66619.1Uncharacterised protein. (33 aa)
SAI66620.1Uncharacterized protein conserved in bacteria. (67 aa)
SAI66622.1SnoaL-like domain. (140 aa)
SAI66623.1Putative hydrolase. (365 aa)
ompQ_1Outer membrane porin protein OmpQ. (364 aa)
amiC_1N-acetylmuramoyl-L-alanine amidase. (459 aa)
impOrganic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (794 aa)
mnmC_1tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (356 aa)
mnmC_2tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC. (267 aa)
SAI67008.1Protein of uncharacterised function (DUF721). (142 aa)
SAI67055.1Membrane protein. (122 aa)
SAI67069.1Predicted periplasmic/secreted protein. (251 aa)
zapAZ ring-associated protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. (103 aa)
SAI67072.1Uncharacterised protein. (148 aa)
rppHDinucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (189 aa)
bpH1Histone protein. (255 aa)
slyBOuter membrane lipoprotein. (173 aa)
SAI67398.1Membrane protein. (371 aa)
prmARibosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. (302 aa)
SAI67413.1Esterase. (199 aa)
rnbRibonuclease. (640 aa)
lptGPermease. (392 aa)
SAI67562.1Protein of uncharacterised function (DUF3460). (62 aa)
SAI67625.1Uncharacterised protein. (295 aa)
SAI67656.1Membrane protein. (335 aa)
SAI67693.1Outer membrane porin. (370 aa)
SAI67721.1Uncharacterized protein conserved in bacteria. (209 aa)
lptAUncharacterized protein conserved in bacteria; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. (199 aa)
lptB_2ABC transporter ATP-binding protein. (263 aa)
SAI67805.1Outer membrane porin protein. (355 aa)
SAI67875.1Uncharacterised protein. (235 aa)
SAI67886.1Signaling protein. (586 aa)
trxB_2Thioredoxin reductase. (297 aa)
SAI67933.1Outer membrane porin protein. (368 aa)
SAI67974.1Regulatory protein. (236 aa)
SAI68001.1Membrane protein. (229 aa)
SAI68007.1Transposase and inactivated derivatives. (247 aa)
sspStringent starvation protein. (203 aa)
sspBClpXP protease specificity-enhancing factor. (146 aa)
SAI68198.1Uncharacterised protein. (105 aa)
SAI68200.1Domain of uncharacterised function (DUF1840). (111 aa)
SAI68203.1Cell division protein FtsN. (231 aa)
ccsBC-type cytochrome bigenesis protein. (693 aa)
SAI68494.1Cytochrome c biogenesis protein. (442 aa)
yajRMFS family transporter. (394 aa)
SAI68667.1Predicted Fe-S protein. (80 aa)
SAI68678.15-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (226 aa)
sltSoluble lytic murein transglycosylase. (705 aa)
ccatRNA CCA-pyrophosphorylase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. (362 aa)
SAI68681.1Uncharacterized ACR%2C COG1565. (392 aa)
tam_2Trans-aconitate 2-methyltransferase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. (307 aa)
ampDN-acetyl-anhydromuranmyl-L-alanine amidase. (197 aa)
SAI69095.1Uncharacterised protein. (82 aa)
ypjDCytochrome assembly protein. (280 aa)
SAI69403.1Uncharacterised protein. (93 aa)
mrpAmidase; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (361 aa)
SAI69407.1Surface antigen. (641 aa)
SAI69409.1Family of uncharacterised function (DUF490). (1217 aa)
yhfAOsmC-like protein. (142 aa)
SAI69543.1Membrane protein. (248 aa)
SAI69586.1Putative assembly protein. (820 aa)
SAI69588.1Uncharacterized Fe-S protein. (128 aa)
SAI70329.1Lytic transglycosylase. (272 aa)
patAAminotransferase. (384 aa)
SAI70336.1Lipid acyl hydrolase. (401 aa)
SAI70339.1Ribonuclease inhibitor. (154 aa)
SAI70811.1Outer membrane porin protein. (375 aa)
SAI70826.1Membrane protein. (103 aa)
lplTLysophospholipid transporter LplT. (438 aa)
SAI70841.1Membrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. (353 aa)
dnaLDNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (695 aa)
lptFPermease. (370 aa)
SAI71115.1Membrane protein. (161 aa)
comLLipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (280 aa)
SAI71320.1Outer membrane porin protein. (378 aa)
SAI71390.1stearoyl-CoA desaturase. (401 aa)
mgsAMethylglyoxal synthase. (295 aa)
recJsingle-stranded-DNA-specific exonuclease. (580 aa)
SAI71537.1Uncharacterized protein conserved in bacteria. (326 aa)
lolELipoprotein releasing system%2C transmembrane protein. (426 aa)
lolD_3Lipoprotein releasing system%2C ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. (241 aa)
yjjVDeoxyribonuclease. (270 aa)
ybcJRibosome-associated protein. (81 aa)
SAI71549.1Membrane protein. (191 aa)
SAI72038.1Thioredoxin. (111 aa)
bamASurface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (789 aa)
rluFPseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family. (234 aa)
yqiCUncharacterized protein conserved in bacteria. (90 aa)
SAI73371.1Protein of uncharacterised function (DUF3579). (96 aa)
SAI73458.1Lipoprotein. (215 aa)
SAI73476.1Protein of uncharacterised function (DUF498/DUF598). (153 aa)
bcp_2Antioxidant protein. (154 aa)
ybeZ_2PhoH-like protein. (567 aa)
SAI73643.1Probable Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (90 aa)
SAI73654.1PhoP regulatory network protein YrbL. (229 aa)
SAI73778.1Membrane protein. (102 aa)
SAI74033.1Membrane protein. (267 aa)
gptXanthine-guanine phosphoribosyltransferase. (183 aa)
yfgLLipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (385 aa)
SAI74139.1Uncharacterized protein involved in outer membrane biogenesis. (1220 aa)
SAI74192.1Membrane protein. (576 aa)
norMMultidrug resistance protein. (467 aa)
SAI74272.1Oxidoreductase-like protein%2C N-terminal. (59 aa)
speESpermidine synthase (putrescine aminopropyltransferase). (256 aa)
lptELipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. (224 aa)
Your Current Organism:
Bordetella trematum
NCBI taxonomy Id: 123899
Other names: B. trematum, CCUG 32381, CIP 105351, DSM 11334, LMG 13506, LMG:13506, NCTC 12995
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