18 items (Mariniradius saccharolyticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C943_00084	Pyruvate-flavodoxin oxidoreductase. (1632 aa)
	C943_00528	Biotin carboxyl carrier protein of acetyl-CoA carboxylase. (164 aa)
	C943_00935	Enoyl-CoA hydratase. (801 aa)
	C943_00979	3-hydroxybutyryl-CoA dehydrogenase. (292 aa)
	C943_01235	Cholesterol oxidase. (338 aa)
	C943_01477	Succinate dehydrogenase cytochrome b subunit. (226 aa)
	C943_01478	Succinate dehydrogenase flavoprotein subunit. (644 aa)
	C943_01479	Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (249 aa)
	C943_01994	3-hydroxybutyryl-CoA dehydrogenase. (297 aa)
	C943_02099	acyl-coA-binding protein, ACBP. (86 aa)
	C943_02913	Hydroxymethylglutaryl-CoA lyase. (282 aa)
	C943_02918	Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
	C943_03401	Acetolactate synthase large subunit. (560 aa)
	C943_03402	Acetolactate synthase small subunit. (169 aa)
	C943_03991	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	C943_04413	2-oxoglutarate oxidoreductase, beta subunit. (350 aa)
	C943_04414	2-oxoglutarate oxidoreductase, alpha subunit. (612 aa)
	C943_04508	Peroxidase. (484 aa)

Your Current Organism:

Mariniradius saccharolyticus

NCBI taxonomy Id: 1239962
Other names: Aquiflexum sp. AK6, Cyclobacteriaceae bacterium AK6, M. saccharolyticus AK6, Mariniradius saccharolyticus AK6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
C943_00084	C943_00528	Pyruvate-flavodoxin oxidoreductase.	Biotin carboxyl carrier protein of acetyl-CoA carboxylase.	0.871
C943_00084	C943_00935	Pyruvate-flavodoxin oxidoreductase.	Enoyl-CoA hydratase.	0.911
C943_00084	C943_00979	Pyruvate-flavodoxin oxidoreductase.	3-hydroxybutyryl-CoA dehydrogenase.	0.819
C943_00084	C943_01477	Pyruvate-flavodoxin oxidoreductase.	Succinate dehydrogenase cytochrome b subunit.	0.463
C943_00084	C943_01478	Pyruvate-flavodoxin oxidoreductase.	Succinate dehydrogenase flavoprotein subunit.	0.994
C943_00084	C943_01479	Pyruvate-flavodoxin oxidoreductase.	Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.946
C943_00084	C943_01994	Pyruvate-flavodoxin oxidoreductase.	3-hydroxybutyryl-CoA dehydrogenase.	0.819
C943_00084	C943_02913	Pyruvate-flavodoxin oxidoreductase.	Hydroxymethylglutaryl-CoA lyase.	0.879
C943_00084	C943_02918	Pyruvate-flavodoxin oxidoreductase.	Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.845
C943_00084	C943_03401	Pyruvate-flavodoxin oxidoreductase.	Acetolactate synthase large subunit.	0.902
C943_00084	C943_03402	Pyruvate-flavodoxin oxidoreductase.	Acetolactate synthase small subunit.	0.872
C943_00084	C943_03991	Pyruvate-flavodoxin oxidoreductase.	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.851
C943_00084	C943_04413	Pyruvate-flavodoxin oxidoreductase.	2-oxoglutarate oxidoreductase, beta subunit.	0.999
C943_00084	C943_04414	Pyruvate-flavodoxin oxidoreductase.	2-oxoglutarate oxidoreductase, alpha subunit.	0.999
C943_00084	C943_04508	Pyruvate-flavodoxin oxidoreductase.	Peroxidase.	0.744
C943_00528	C943_00084	Biotin carboxyl carrier protein of acetyl-CoA carboxylase.	Pyruvate-flavodoxin oxidoreductase.	0.871
C943_00528	C943_00935	Biotin carboxyl carrier protein of acetyl-CoA carboxylase.	Enoyl-CoA hydratase.	0.810
C943_00528	C943_01478	Biotin carboxyl carrier protein of acetyl-CoA carboxylase.	Succinate dehydrogenase flavoprotein subunit.	0.429
C943_00528	C943_01479	Biotin carboxyl carrier protein of acetyl-CoA carboxylase.	Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.417
C943_00528	C943_02913	Biotin carboxyl carrier protein of acetyl-CoA carboxylase.	Hydroxymethylglutaryl-CoA lyase.	0.456