STRINGSTRING
S58_01270 S58_01270 S58_01280 S58_01280 S58_01290 S58_01290 S58_01300 S58_01300 S58_01310 S58_01310 S58_01320 S58_01320 S58_01330 S58_01330 S58_10140 S58_10140 S58_10310 S58_10310 S58_13380 S58_13380 nirK nirK S58_13420 S58_13420 S58_13430 S58_13430 S58_13440 S58_13440 S58_21420 S58_21420 S58_22160 S58_22160 S58_24080 S58_24080 S58_32500 S58_32500 S58_32510 S58_32510 S58_39790 S58_39790 S58_39970 S58_39970 S58_42030 S58_42030 S58_42130 S58_42130 S58_42970 S58_42970 S58_51370 S58_51370 S58_51380 S58_51380 S58_51580 S58_51580 S58_51590 S58_51590 S58_51600 S58_51600 fixI fixI fixH fixH S58_51630 S58_51630 fixP fixP S58_51650 S58_51650 S58_51660 S58_51660 S58_51670 S58_51670 S58_57690 S58_57690 S58_57700 S58_57700 S58_57710 S58_57710 S58_57720 S58_57720 napE napE napD napD napD-2 napD-2 napB napB S58_60920 S58_60920 ubiA ubiA S58_64840 S58_64840 nosR nosR nosZ nosZ nosD nosD nosF nosF nosY nosY nosL nosL nosX nosX S58_68130 S58_68130 S58_68140 S58_68140 S58_68150 S58_68150 S58_68160 S58_68160 S58_68170 S58_68170 S58_68180 S58_68180 S58_68190 S58_68190 S58_68210 S58_68210 S58_68220 S58_68220 S58_68230 S58_68230 S58_68240 S58_68240 S58_68250 S58_68250 S58_68260 S58_68260 S58_68270 S58_68270 S58_68280 S58_68280 ubiX ubiX
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
S58_01270Putative cytochrome c oxidase subunit I. (265 aa)
S58_01280Hypothetical protein. (70 aa)
S58_01290Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (294 aa)
S58_01300Cbb3-type cytochrome oxidase component. (56 aa)
S58_01310Cytochrome c oxidase, cbb3-type, subunit II. (247 aa)
S58_01320Cbb3-type cytochrome oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family. (550 aa)
S58_01330Hypothetical protein. (66 aa)
S58_10140Hypothetical protein. (243 aa)
S58_10310Dioxygenase. (322 aa)
S58_13380Putative nitrate reductase. (293 aa)
nirKCopper-containing Nitrite reductase (NO-forming) NirK; Belongs to the multicopper oxidase family. (364 aa)
S58_13420Hypothetical protein. (75 aa)
S58_13430Crp/FNR family transcriptional regulator. (239 aa)
S58_13440Putative membrane protein, NnrS-like. (405 aa)
S58_214202-nitropropane dioxygenase. (319 aa)
S58_22160Putative 4Fe-4S ferredoxin, FixG-like protein. (490 aa)
S58_24080Putative dimethyl sulfoxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (709 aa)
S58_32500Putative 2-nitropropane dioxygenase. (334 aa)
S58_32510Putative 2-nitropropane dioxygenase. (358 aa)
S58_39790Putative formate dehydrogenase (C-terminal), related to acid resistance with formate dehydrogenase/DMSO reductase, domains 1-3 and ADC-like domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (761 aa)
S58_39970Conserved membrane hypothetical protein. (643 aa)
S58_42030Putative 4Fe-4S ferredoxin, iron-sulfur binding. (130 aa)
S58_42130Major facilitator superfamily protein. (415 aa)
S58_42970Nitrogen fixation protein FixG (homologous to rdxB), with 4Fe-4S ferredoxin, iron-sulfur binding domain. (481 aa)
S58_51370Nitrate reductase, large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (897 aa)
S58_51380Nitrite reductase. (404 aa)
S58_51580Receptor/sensory transducer. (709 aa)
S58_51590Conserved hypothetical protein. (384 aa)
S58_51600Cytochrome oxidase maturation protein, cbb3-type. (61 aa)
fixINitrogen fixation protein FixI. (733 aa)
fixHNitrogen fixation protein FixH. (166 aa)
S58_51630Nitrogen fixation protein. (488 aa)
fixPCytochrome C oxidase subunit FixP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (290 aa)
S58_51650Cbb3 oxidase, subunit IV. (54 aa)
S58_51660Cbb3-type cytochrome C oxidase subunit II. (244 aa)
S58_51670Cbb3-type cytochrome C oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (539 aa)
S58_57690Putative nitric-oxide reductase subunit D. (637 aa)
S58_57700Putative nitric-oxide reductase subunit D. (269 aa)
S58_57710Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family. (448 aa)
S58_57720Nitric-oxide reductase subunit C. (150 aa)
napEPeriplasmic nitrate reductase NapE. (61 aa)
napDPutative periplasmic nitrate reductase NapD; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export. (106 aa)
napD-2Nitrate reductase catalytic subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (834 aa)
napBPeriplasmic nitrate reductase subunit NapB; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (156 aa)
S58_60920Periplasmic nitrate reductase, four-heme c-type cytochrome, NapC/NirT protein. (224 aa)
ubiA4-hydroxybenzoate-octaprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. (310 aa)
S58_64840Conserved hypothetical protein. (292 aa)
nosRNitrous oxide reductase regulatory protein NosR. (764 aa)
nosZNitrous oxide reductase NosZ; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family. (640 aa)
nosDCopper ABC transporter periplasmic binding protein NosD. (462 aa)
nosFCopper ABC transporter ATP-binding protein NosF. (306 aa)
nosYCopper ABC transporter permease protein NosY. (276 aa)
nosLNitrous oxide reductase accessory protein NosL. (181 aa)
nosXNitrous oxide reductase accessory protein NosX; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. (334 aa)
S58_68130NirN protein. (518 aa)
S58_68140Hypothetical protein. (402 aa)
S58_68150Hypothetical protein. (158 aa)
S58_68160Heme d1 biosynthesis protein NirG. (150 aa)
S58_68170Possible transcriptional Regulator, AsnC family. (327 aa)
S58_68180Cytochrome cd1 nitrite reductase. (391 aa)
S58_68190Cytochrome c55X. (112 aa)
S58_68210Cytochrome cd1 nitrite reductase. (584 aa)
S58_68220Nitrous oxide expression regulator, NosR. (692 aa)
S58_68230FAD:protein FMN transferase; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. (329 aa)
S58_68240Hypothetical protein. (254 aa)
S58_68250Protease. (296 aa)
S58_68260Peptidase. (325 aa)
S58_68270Conserved hypothetical protein. (186 aa)
S58_682803-octaprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family. (508 aa)
ubiXHypothetical protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (201 aa)
Your Current Organism:
Bradyrhizobium oligotrophicum
NCBI taxonomy Id: 1245469
Other names: Agromonas oligotrophica LMG 10732, Agromonas oligotrophica S58, B. oligotrophicum S58, Bradyrhizobium oligotrophicum S58
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