STRINGSTRING
S58_06110 S58_06110 S58_07030 S58_07030 S58_12270 S58_12270 S58_15360 S58_15360 S58_43350 S58_43350 S58_52650 S58_52650 S58_58780 S58_58780 cbbL cbbL S58_58800 S58_58800 S58_58820 S58_58820 fbp fbp S58_58850 S58_58850 S58_58860 S58_58860 acsF acsF S58_58930 S58_58930 bchL bchL bchB bchB bchN bchN S58_59000 S58_59000 S58_59030 S58_59030 S58_59040 S58_59040 S58_59050 S58_59050 S58_59110 S58_59110 S58_59120 S58_59120 S58_59130 S58_59130 S58_59140 S58_59140 S58_59160 S58_59160 S58_59170 S58_59170 S58_59180 S58_59180 S58_59200 S58_59200 S58_59230 S58_59230 S58_59290 S58_59290 S58_59300 S58_59300 S58_60280 S58_60280 S58_60370 S58_60370 S58_67690 S58_67690
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
S58_06110Signal peptide. (360 aa)
S58_07030Electron transport protein. (197 aa)
S58_12270Fructose-bisphosphate aldolase, class II, calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (355 aa)
S58_15360Hypothetical protein. (299 aa)
S58_43350Conserved hypothetical protein. (140 aa)
S58_52650Tryptophan-rich sensory protein. (151 aa)
S58_58780Ribulose bisphosphate carboxylase small chain, RuBisCO small subunit. (139 aa)
cbbLRibulose bisphosphate carboxylase large chain, RuBisCO large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (486 aa)
S58_58800Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (360 aa)
S58_58820Phosphoribulokinase. (291 aa)
fbpD-fructose-1,6-bisphosphatase protein; Belongs to the FBPase class 1 family. (347 aa)
S58_588504-vinyl protochlorophyllide reductase. (216 aa)
S58_58860Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit. (531 aa)
acsFMagnesium-protoporphyrin IX monomethyl ester cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. (353 aa)
S58_58930Reaction center protein H chain. (260 aa)
bchLProtochlorophyllide reductase iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. (301 aa)
bchBLight-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (517 aa)
bchNLight-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (428 aa)
S58_590002-vinyl bacteriochlorophyllide hydratase. (196 aa)
S58_59030Bacteriochlorophyll synthase 33 kDa chain. (304 aa)
S58_59040Light harvesting pigment major facilitator family (MFS) transporter, Bch2-like protein. (444 aa)
S58_59050Geranylgeranyl reductase. (403 aa)
S58_59110Photosynthetic reaction center subunit M; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (308 aa)
S58_59120Photosynthetic reaction center subunit L. (278 aa)
S58_59130Light harvesting 1 subunit alpha; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (62 aa)
S58_59140Light harvesting 1 subunit beta; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (76 aa)
S58_59160Bacteriochlorophyllide reductase Z subunit. (483 aa)
S58_59170Bacteriochlorophyllide reductase subunit 52.5 kDa chain. (515 aa)
S58_59180Bacteriochlorophyllide reductase subunit; Belongs to the NifH/BchL/ChlL family. (332 aa)
S58_59200hydroxyneurosporene-O-methyltransferase. (381 aa)
S58_59230Neurosporene and anhydrorhodovibrin hydratase. (270 aa)
S58_59290Magnesium-chelatase 60 kDa subunit. (580 aa)
S58_59300Magnesium-chelatase 38 kDa subunit; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. (348 aa)
S58_60280Hypothetical protein. (588 aa)
S58_60370Fe-S oxidoreductase. (512 aa)
S58_67690Uncharacterized ribulose bisphosphate carboxylase-like protein; Belongs to the RuBisCO large chain family. (424 aa)
Your Current Organism:
Bradyrhizobium oligotrophicum
NCBI taxonomy Id: 1245469
Other names: Agromonas oligotrophica LMG 10732, Agromonas oligotrophica S58, B. oligotrophicum S58, Bradyrhizobium oligotrophicum S58
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