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S58_00670 S58_00670 dapB dapB yggW yggW S58_02100 S58_02100 S58_02440 S58_02440 S58_02450 S58_02450 S58_02460 S58_02460 S58_02470 S58_02470 S58_02510 S58_02510 S58_05700 S58_05700 S58_05920 S58_05920 S58_05930 S58_05930 S58_06280 S58_06280 S58_06290 S58_06290 pyrD pyrD S58_07280 S58_07280 S58_11590 S58_11590 S58_11720 S58_11720 S58_12190 S58_12190 S58_13410 S58_13410 S58_15680 S58_15680 S58_15740 S58_15740 pqqD-2 pqqD-2 S58_18860 S58_18860 S58_21320 S58_21320 S58_21400 S58_21400 S58_21410 S58_21410 S58_21480 S58_21480 S58_21560 S58_21560 S58_21780 S58_21780 S58_23490 S58_23490 S58_25320 S58_25320 S58_27880 S58_27880 dusA dusA S58_32430 S58_32430 S58_32860 S58_32860 S58_32900 S58_32900 S58_36640 S58_36640 S58_39190 S58_39190 S58_40850 S58_40850 S58_44570 S58_44570 S58_44820 S58_44820 S58_44930 S58_44930 S58_45690 S58_45690 S58_45910 S58_45910 S58_48500 S58_48500 S58_50370 S58_50370 S58_52790 S58_52790 S58_53450 S58_53450 S58_53770 S58_53770 S58_53920 S58_53920 hemF hemF bchL bchL bchB bchB bchN bchN S58_59050 S58_59050 S58_59180 S58_59180 S58_62300 S58_62300 S58_66440 S58_66440 S58_66450 S58_66450 S58_66760 S58_66760 S58_66880 S58_66880 S58_66890 S58_66890 S58_66900 S58_66900 S58_67040 S58_67040 S58_68770 S58_68770 S58_69890 S58_69890 S58_69900 S58_69900 S58_72500 S58_72500
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
S58_00670Enoyl-(acyl-carrier-protein) reductase. (266 aa)
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (272 aa)
yggWPutative oxygen-independent coproporphyrinogen III oxidase YggW; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (385 aa)
S58_02100Conserved membrane hypothetical protein. (140 aa)
S58_02440Succinate dehydrogenase cytochrome b556 subunit. (132 aa)
S58_02450Succinate dehydrogenase hydrophobic membrane anchor protein. (132 aa)
S58_02460Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (612 aa)
S58_02470Succinate dehydrogenase, Fe-S protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
S58_02510Conserved hypothetical protein. (161 aa)
S58_05700Putative acyl-CoA dehydrogenase. (408 aa)
S58_05920Putative acyl-CoA dehydrogenase. (379 aa)
S58_05930Putative acyl-CoA dehydrogenase. (389 aa)
S58_06280Putative acyl-CoA dehydrogenase. (394 aa)
S58_06290acyl-CoA dehydrogenase. (351 aa)
pyrDDihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (364 aa)
S58_07280acyl-CoA dehydrogenase. (596 aa)
S58_11590Cyclohexadienyl dehydrogenase. (311 aa)
S58_11720Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. (476 aa)
S58_12190Hypothetical protein. (271 aa)
S58_13410Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (450 aa)
S58_15680acyl-CoA dehydrogenase. (388 aa)
S58_15740isovaleryl-CoA dehydrogenase. (390 aa)
pqqD-2Pyrroloquinoline quinone biosynthesis protein PqqD; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. (259 aa)
S58_18860Conserved hypothetical protein. (201 aa)
S58_21320Putative acyl-CoA dehydrogenase-like. (740 aa)
S58_21400Putative acyl-CoA dehydrogenase. (383 aa)
S58_21410Conserved hypothetical protein. (398 aa)
S58_21480Putative acyl-CoA dehydrogenase fadE25. (379 aa)
S58_21560Hypothetical protein. (365 aa)
S58_21780Putative fumarate reductase/succinate dehydrogenase, flavoprotein subunit. (580 aa)
S58_23490Hypothetical protein. (203 aa)
S58_25320Putative UDP-glucose/GDP-mannose dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (419 aa)
S58_27880precorrin-6A reductase. (257 aa)
dusAtRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (319 aa)
S58_32430Isovaleryl CoA dehydrogenase. (547 aa)
S58_32860Putative fumarate reductase flavoprotein. (533 aa)
S58_329003-oxosteroid 1-dehydrogenase. (577 aa)
S58_36640Putative succinate dehydrogenase, fumarate reductase, FAD requiring protein. (471 aa)
S58_39190Putative tRNA-dihydrouridine synthase, Nitrogen regulation protein NifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (344 aa)
S58_40850acyl-CoA dehydrogenase. (398 aa)
S58_44570NADP-dependent oxidoreductase. (340 aa)
S58_44820acyl-CoA dehydrogenase. (381 aa)
S58_44930Putative acyl-CoA dehydrogenase. (388 aa)
S58_45690acyl-CoA dehydrogenase. (411 aa)
S58_45910Putative acyl-CoA dehydrogenase. (392 aa)
S58_48500Putative acyl-CoA dehydrogenase family protein. (373 aa)
S58_50370Putative acyl-CoA dehydrogenase. (424 aa)
S58_52790Putative short-chain specific acyl-CoA dehydrogenase. (428 aa)
S58_53450Putative acyl-CoA dehydrogenase. (592 aa)
S58_53770Enoyl-(acyl-carrier-protein) reductase. (270 aa)
S58_53920glutaryl-CoA dehydrogenase. (404 aa)
hemFCoproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. (295 aa)
bchLProtochlorophyllide reductase iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. (301 aa)
bchBLight-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (517 aa)
bchNLight-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (428 aa)
S58_59050Geranylgeranyl reductase. (403 aa)
S58_59180Bacteriochlorophyllide reductase subunit; Belongs to the NifH/BchL/ChlL family. (332 aa)
S58_62300Putative membrane protein. (139 aa)
S58_66440Putative acyl-CoA dehydrogenase. (399 aa)
S58_66450acyl-CoA dehydrogenase. (396 aa)
S58_66760Conserved hypothetical protein. (210 aa)
S58_66880acyl-CoA dehydrogenase. (415 aa)
S58_66890acyl-CoA dehydrogenase. (414 aa)
S58_66900Putative acyl-CoA dehydrogenase. (375 aa)
S58_67040Putative acyl-CoA dehydrogenase. (594 aa)
S58_68770Conserved hypothetical protein. (242 aa)
S58_69890Putative acyl-CoA dehydrogenase. (354 aa)
S58_69900Putative acyl-CoA dehydrogenase. (385 aa)
S58_72500Putative acyl-CoA dehydrogenase. (398 aa)
Your Current Organism:
Bradyrhizobium oligotrophicum
NCBI taxonomy Id: 1245469
Other names: Agromonas oligotrophica LMG 10732, Agromonas oligotrophica S58, B. oligotrophicum S58, Bradyrhizobium oligotrophicum S58
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