(33 nodes) Aminobenzoate degradation network (Bradyrhizobium oligotrophicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

Your Input:
	S58_06690	Putative AMP-dependent synthetase and ligase. (512 aa)
	S58_15650	Benzoylformate decarboxylase; Belongs to the TPP enzyme family. (540 aa)
	S58_18290	Putative amidase; Belongs to the amidase family. (463 aa)
	S58_19960	Putative amidase; Belongs to the amidase family. (499 aa)
	S58_24690	Putative flavin-containing monooxygenase. (486 aa)
	S58_24710	Putative flavin-containing monooxygenase. (640 aa)
	S58_28320	Acetamidase/formamidase family protein. (329 aa)
	S58_31250	Putative acylphosphatase. (100 aa)
	S58_31620	Putative amidase. (498 aa)
	S58_31930	Aliphatic nitrilase. (335 aa)
	S58_33890	Putative mandelate racemase/muconate lactonizing enzyme family protein. (360 aa)
	S58_35670	Amidase; Belongs to the amidase family. (504 aa)
	S58_38940	Nitrile hydratase subunit alpha. (209 aa)
	S58_38950	Nitrile hydratase subunit beta; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family. (219 aa)
	S58_44810	enoyl-CoA hydratase/isomerase. (358 aa)
	S58_48340	Amidohydrolase. (294 aa)
	S58_49540	Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
	S58_50800	Putative amidotransferase. (473 aa)
	S58_52120	Hypothetical protein. (314 aa)
	S58_52220	Protocatechuate 4,5-dioxygenase beta chain. (279 aa)
	S58_52230	Protocatechuate 4,5-dioxygenase subunit alpha. (117 aa)
	S58_52560	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. (319 aa)
	S58_52570	Protocatechuate 4,5-dioxygenase beta subunit. (287 aa)
	S58_52580	Protocatechuate 4,5-dioxygenase alpha subunit. (129 aa)
	S58_52590	2-pyrone-4,6-dicarboxylic acid hydrolase. (304 aa)
	S58_52700	Putative acid-thiol ligase. (562 aa)
	S58_52750	NADPH dehydrogenase. (782 aa)
	S58_57790	Amidase; Belongs to the amidase family. (524 aa)
	S58_60410	Amidase; Belongs to the amidase family. (483 aa)
	S58_63420	Putative thiamine pyrophosphate-requiring enzyme; Belongs to the TPP enzyme family. (554 aa)
	S58_67020	Amidase; Belongs to the amidase family. (489 aa)
	S58_67270	Amidase. (491 aa)
	ubiX	Hypothetical protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (201 aa)

Your Current Organism:

Bradyrhizobium oligotrophicum

NCBI taxonomy Id: 1245469
Other names: Agromonas oligotrophica LMG 10732, Agromonas oligotrophica S58, B. oligotrophicum S58, Bradyrhizobium oligotrophicum S58

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S58_06690	S58_18290	S58_06690	S58_18290	Putative AMP-dependent synthetase and ligase.	Putative amidase; Belongs to the amidase family.	0.903
S58_06690	S58_19960	S58_06690	S58_19960	Putative AMP-dependent synthetase and ligase.	Putative amidase; Belongs to the amidase family.	0.903
S58_06690	S58_28320	S58_06690	S58_28320	Putative AMP-dependent synthetase and ligase.	Acetamidase/formamidase family protein.	0.900
S58_06690	S58_31250	S58_06690	S58_31250	Putative AMP-dependent synthetase and ligase.	Putative acylphosphatase.	0.902
S58_06690	S58_31620	S58_06690	S58_31620	Putative AMP-dependent synthetase and ligase.	Putative amidase.	0.903
S58_06690	S58_31930	S58_06690	S58_31930	Putative AMP-dependent synthetase and ligase.	Aliphatic nitrilase.	0.904
S58_06690	S58_35670	S58_06690	S58_35670	Putative AMP-dependent synthetase and ligase.	Amidase; Belongs to the amidase family.	0.903
S58_06690	S58_48340	S58_06690	S58_48340	Putative AMP-dependent synthetase and ligase.	Amidohydrolase.	0.800
S58_06690	S58_50800	S58_06690	S58_50800	Putative AMP-dependent synthetase and ligase.	Putative amidotransferase.	0.903
S58_06690	S58_52120	S58_06690	S58_52120	Putative AMP-dependent synthetase and ligase.	Hypothetical protein.	0.800
S58_06690	S58_52590	S58_06690	S58_52590	Putative AMP-dependent synthetase and ligase.	2-pyrone-4,6-dicarboxylic acid hydrolase.	0.800
S58_06690	S58_57790	S58_06690	S58_57790	Putative AMP-dependent synthetase and ligase.	Amidase; Belongs to the amidase family.	0.903
S58_06690	S58_60410	S58_06690	S58_60410	Putative AMP-dependent synthetase and ligase.	Amidase; Belongs to the amidase family.	0.903
S58_06690	S58_67020	S58_06690	S58_67020	Putative AMP-dependent synthetase and ligase.	Amidase; Belongs to the amidase family.	0.903
S58_06690	S58_67270	S58_06690	S58_67270	Putative AMP-dependent synthetase and ligase.	Amidase.	0.903
S58_06690	ubiX	S58_06690	S58_68290	Putative AMP-dependent synthetase and ligase.	Hypothetical protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.	0.909
S58_15650	S58_63420	S58_15650	S58_63420	Benzoylformate decarboxylase; Belongs to the TPP enzyme family.	Putative thiamine pyrophosphate-requiring enzyme; Belongs to the TPP enzyme family.	0.919
S58_18290	S58_06690	S58_18290	S58_06690	Putative amidase; Belongs to the amidase family.	Putative AMP-dependent synthetase and ligase.	0.903
S58_18290	S58_31250	S58_18290	S58_31250	Putative amidase; Belongs to the amidase family.	Putative acylphosphatase.	0.903
S58_18290	S58_31930	S58_18290	S58_31930	Putative amidase; Belongs to the amidase family.	Aliphatic nitrilase.	0.910