(12 nodes) Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains, and Palmitate network (Pseudomonas resinovorans NBRC106553)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BAN47953.1	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (390 aa)
	mexF	RND-type multidrug efflux pump membrane protein MexF. (1072 aa)
	BAN47955.1	Multidrug efflux pump outer membrane protein. (494 aa)
	mexF-2	RND-type multidrug efflux pump membrane protein MexF. (1050 aa)
	BAN48320.1	Putative membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (386 aa)
	mexE	RND-type multidrug efflux pump membrane fusion protein MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (413 aa)
	mexF-3	RND-type multidrug efflux pump membrane protein MexF. (1062 aa)
	oprN	RND-type multidrug efflux pump outer membrane protein OprN. (464 aa)
	BAN48956.1	Multidrug efflux pump outer membrane protein. (499 aa)
	BAN48957.1	Multidrug efflux pump membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1035 aa)
	BAN48958.1	Multidrug efflux pump membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1030 aa)
	BAN48959.1	Multidrug efflux pump membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (421 aa)

Your Current Organism:

Pseudomonas resinovorans NBRC106553

NCBI taxonomy Id: 1245471
Other names: P. resinovorans NBRC 106553, Pseudomonas resinovorans NBRC 106553

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAN47953.1	BAN47955.1	PCA10_22210	PCA10_22230	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug efflux pump outer membrane protein.	0.958
BAN47953.1	BAN48956.1	PCA10_22210	PCA10_32240	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug efflux pump outer membrane protein.	0.776
BAN47953.1	BAN48957.1	PCA10_22210	PCA10_32250	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug efflux pump membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.677
BAN47953.1	BAN48958.1	PCA10_22210	PCA10_32260	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug efflux pump membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.665
BAN47953.1	mexF	PCA10_22210	PCA10_22220	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	RND-type multidrug efflux pump membrane protein MexF.	0.991
BAN47953.1	mexF-2	PCA10_22210	PCA10_25870	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	RND-type multidrug efflux pump membrane protein MexF.	0.944
BAN47953.1	mexF-3	PCA10_22210	PCA10_31970	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	RND-type multidrug efflux pump membrane protein MexF.	0.968
BAN47953.1	oprN	PCA10_22210	PCA10_31980	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	RND-type multidrug efflux pump outer membrane protein OprN.	0.852
BAN47955.1	BAN47953.1	PCA10_22230	PCA10_22210	Multidrug efflux pump outer membrane protein.	Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.958
BAN47955.1	BAN48320.1	PCA10_22230	PCA10_25880	Multidrug efflux pump outer membrane protein.	Putative membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.789
BAN47955.1	BAN48957.1	PCA10_22230	PCA10_32250	Multidrug efflux pump outer membrane protein.	Multidrug efflux pump membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.548
BAN47955.1	BAN48958.1	PCA10_22230	PCA10_32260	Multidrug efflux pump outer membrane protein.	Multidrug efflux pump membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.584
BAN47955.1	BAN48959.1	PCA10_22230	PCA10_32270	Multidrug efflux pump outer membrane protein.	Multidrug efflux pump membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.799
BAN47955.1	mexE	PCA10_22230	PCA10_31960	Multidrug efflux pump outer membrane protein.	RND-type multidrug efflux pump membrane fusion protein MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.822
BAN47955.1	mexF	PCA10_22230	PCA10_22220	Multidrug efflux pump outer membrane protein.	RND-type multidrug efflux pump membrane protein MexF.	0.950
BAN47955.1	mexF-2	PCA10_22230	PCA10_25870	Multidrug efflux pump outer membrane protein.	RND-type multidrug efflux pump membrane protein MexF.	0.766
BAN47955.1	mexF-3	PCA10_22230	PCA10_31970	Multidrug efflux pump outer membrane protein.	RND-type multidrug efflux pump membrane protein MexF.	0.790
BAN48320.1	BAN47955.1	PCA10_25880	PCA10_22230	Putative membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug efflux pump outer membrane protein.	0.789
BAN48320.1	BAN48956.1	PCA10_25880	PCA10_32240	Putative membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug efflux pump outer membrane protein.	0.755
BAN48320.1	BAN48957.1	PCA10_25880	PCA10_32250	Putative membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug efflux pump membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.686