(14 nodes) Beta-lactamase/transpeptidase-like network (Pseudomonas resinovorans NBRC106553)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BAN48056.1	Hypothetical protein. (275 aa)
	mrdA	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (632 aa)
	dacC	D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family. (387 aa)
	ftsI	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. (577 aa)
	pbpG	D-alanyl-D-alanine endopeptidase; Belongs to the peptidase S11 family. (315 aa)
	estC	Esterase. (382 aa)
	BAN47397.1	Hypothetical protein. (995 aa)
	dacB	Putative D-alanyl-D-alanine carboxypeptidase DacB. (485 aa)
	glsA	Glutaminase; Belongs to the glutaminase family. (302 aa)
	ampC	Beta-lactamase. (378 aa)
	BAN50399.1	Putative hydrolase. (370 aa)
	mrcB	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (751 aa)
	pbpC	Penicillin-binding protein 1C. (780 aa)
	mrcA	Penicillin-binding protein 1A. (813 aa)

Your Current Organism:

Pseudomonas resinovorans NBRC106553

NCBI taxonomy Id: 1245471
Other names: P. resinovorans NBRC 106553, Pseudomonas resinovorans NBRC 106553

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAN47397.1	ftsI	PCA10_16650	PCA10_10720	Hypothetical protein.	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.506
BAN47397.1	mrdA	PCA10_16650	PCA10_07970	Hypothetical protein.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.506
dacB	dacC	PCA10_20690	PCA10_08010	Putative D-alanyl-D-alanine carboxypeptidase DacB.	D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.	0.921
dacB	pbpC	PCA10_20690	PCA10_50760	Putative D-alanyl-D-alanine carboxypeptidase DacB.	Penicillin-binding protein 1C.	0.629
dacC	dacB	PCA10_08010	PCA10_20690	D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.	Putative D-alanyl-D-alanine carboxypeptidase DacB.	0.921
dacC	ftsI	PCA10_08010	PCA10_10720	D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.517
dacC	mrcA	PCA10_08010	PCA10_52660	D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.	Penicillin-binding protein 1A.	0.921
dacC	mrdA	PCA10_08010	PCA10_07970	D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.757
ftsI	BAN47397.1	PCA10_10720	PCA10_16650	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	Hypothetical protein.	0.506
ftsI	dacC	PCA10_10720	PCA10_08010	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.	0.517
ftsI	mrcA	PCA10_10720	PCA10_52660	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	Penicillin-binding protein 1A.	0.748
ftsI	mrcB	PCA10_10720	PCA10_48680	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.811
ftsI	mrdA	PCA10_10720	PCA10_07970	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.944
ftsI	pbpC	PCA10_10720	PCA10_50760	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	Penicillin-binding protein 1C.	0.674
ftsI	pbpG	PCA10_10720	PCA10_12390	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	D-alanyl-D-alanine endopeptidase; Belongs to the peptidase S11 family.	0.544
mrcA	dacC	PCA10_52660	PCA10_08010	Penicillin-binding protein 1A.	D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.	0.921
mrcA	ftsI	PCA10_52660	PCA10_10720	Penicillin-binding protein 1A.	Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.748
mrcA	mrcB	PCA10_52660	PCA10_48680	Penicillin-binding protein 1A.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.953
mrcA	mrdA	PCA10_52660	PCA10_07970	Penicillin-binding protein 1A.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.600
mrcA	pbpC	PCA10_52660	PCA10_50760	Penicillin-binding protein 1A.	Penicillin-binding protein 1C.	0.926