(10 nodes) ABC transporter membrane protein permease protein ArtM/GltK/GlnP/TcyL/YhdX-like network (Pseudomonas resinovorans NBRC106553)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BAN47248.1	Putative ABC transporter permease protein. (218 aa)
	BAN51099.1	Amino acid ABC transporter permease protein. (229 aa)
	BAN51027.1	Putative amino acid ABC transporter permease protein. (320 aa)
	BAN49585.1	Amino acid ABC transporter permease protein. (221 aa)
	BAN49584.1	Amino acid ABC transporter permease protein. (248 aa)
	BAN47617.1	Putative amino acid ABC transporter permease protein. (247 aa)
	aapQ	General L-amino acid ABC transporter permease protein AapQ. (395 aa)
	aapM	General L-amino acid ABC transporter permease protein AapM. (365 aa)
	BAN46707.1	Amino acid ABC transporter permease protein. (231 aa)
	BAN45929.1	Cystine ABC transporter permease protein. (222 aa)

Your Current Organism:

Pseudomonas resinovorans NBRC106553

NCBI taxonomy Id: 1245471
Other names: P. resinovorans NBRC 106553, Pseudomonas resinovorans NBRC 106553

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAN45929.1	BAN46707.1	PCA10_01970	PCA10_09750	Cystine ABC transporter permease protein.	Amino acid ABC transporter permease protein.	0.508
BAN45929.1	BAN47248.1	PCA10_01970	PCA10_15160	Cystine ABC transporter permease protein.	Putative ABC transporter permease protein.	0.453
BAN45929.1	BAN47617.1	PCA10_01970	PCA10_18850	Cystine ABC transporter permease protein.	Putative amino acid ABC transporter permease protein.	0.625
BAN45929.1	BAN49584.1	PCA10_01970	PCA10_38520	Cystine ABC transporter permease protein.	Amino acid ABC transporter permease protein.	0.519
BAN45929.1	BAN49585.1	PCA10_01970	PCA10_38530	Cystine ABC transporter permease protein.	Amino acid ABC transporter permease protein.	0.683
BAN45929.1	BAN51027.1	PCA10_01970	PCA10_52950	Cystine ABC transporter permease protein.	Putative amino acid ABC transporter permease protein.	0.459
BAN45929.1	BAN51099.1	PCA10_01970	PCA10_53670	Cystine ABC transporter permease protein.	Amino acid ABC transporter permease protein.	0.478
BAN45929.1	aapM	PCA10_01970	PCA10_11970	Cystine ABC transporter permease protein.	General L-amino acid ABC transporter permease protein AapM.	0.652
BAN45929.1	aapQ	PCA10_01970	PCA10_11980	Cystine ABC transporter permease protein.	General L-amino acid ABC transporter permease protein AapQ.	0.669
BAN46707.1	BAN45929.1	PCA10_09750	PCA10_01970	Amino acid ABC transporter permease protein.	Cystine ABC transporter permease protein.	0.508
BAN46707.1	BAN47248.1	PCA10_09750	PCA10_15160	Amino acid ABC transporter permease protein.	Putative ABC transporter permease protein.	0.530
BAN46707.1	BAN47617.1	PCA10_09750	PCA10_18850	Amino acid ABC transporter permease protein.	Putative amino acid ABC transporter permease protein.	0.567
BAN46707.1	BAN49584.1	PCA10_09750	PCA10_38520	Amino acid ABC transporter permease protein.	Amino acid ABC transporter permease protein.	0.528
BAN46707.1	BAN49585.1	PCA10_09750	PCA10_38530	Amino acid ABC transporter permease protein.	Amino acid ABC transporter permease protein.	0.503
BAN46707.1	BAN51027.1	PCA10_09750	PCA10_52950	Amino acid ABC transporter permease protein.	Putative amino acid ABC transporter permease protein.	0.476
BAN46707.1	BAN51099.1	PCA10_09750	PCA10_53670	Amino acid ABC transporter permease protein.	Amino acid ABC transporter permease protein.	0.432
BAN46707.1	aapM	PCA10_09750	PCA10_11970	Amino acid ABC transporter permease protein.	General L-amino acid ABC transporter permease protein AapM.	0.492
BAN46707.1	aapQ	PCA10_09750	PCA10_11980	Amino acid ABC transporter permease protein.	General L-amino acid ABC transporter permease protein AapQ.	0.477
BAN47248.1	BAN45929.1	PCA10_15160	PCA10_01970	Putative ABC transporter permease protein.	Cystine ABC transporter permease protein.	0.453
BAN47248.1	BAN46707.1	PCA10_15160	PCA10_09750	Putative ABC transporter permease protein.	Amino acid ABC transporter permease protein.	0.530