(14 nodes) Extracellular membrane-bounded organelle network (Actinoplanes friuliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFR_25965	Hypothetical protein; COG0388 Predicted amidohydrolase. (274 aa)
	AFR_31705	Selenium-binding protein 1. (467 aa)
	AFR_32230	Hypothetical protein; COG0388 Predicted amidohydrolase. (239 aa)
	AFR_37055	Heat shock protein 70; COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family. (597 aa)
	AFR_37295	COG1250 3-hydroxyacyl-CoA dehydrogenase. (282 aa)
	AFR_05615	Hypothetical protein; COG1607 Acyl-CoA hydrolase. (171 aa)
	glyQS	glycyl-tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (459 aa)
	AFR_12475	Molecular chaperone DnaK. (351 aa)
	AFR_17080	COG0076 Glutamate decarboxylase and related PLP-dependent proteins. (490 aa)
	AFR_20805	3-hydroxybutyryl-CoA dehydrogenase PaaC; COG1250 3-hydroxyacyl-CoA dehydrogenase. (285 aa)
	AFR_25960	Nitrilase; COG0388 Predicted amidohydrolase. (278 aa)
	AFR_27550	Putative carbon-nitrogen hydrolase; COG0388 Predicted amidohydrolase. (279 aa)
	AFR_41090	Heat shock protein 70; COG0443 Molecular chaperone. (960 aa)
	dnaK	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (632 aa)

Your Current Organism:

Actinoplanes friuliensis

NCBI taxonomy Id: 1246995
Other names: A. friuliensis DSM 7358, Actinoplanes friuliensis DSM 7358, Actinoplanes friuliensis HAG 010964

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFR_12475	AFR_41090	AFR_12475	AFR_41090	Molecular chaperone DnaK.	Heat shock protein 70; COG0443 Molecular chaperone.	0.474
AFR_20805	AFR_37295	AFR_20805	AFR_37295	3-hydroxybutyryl-CoA dehydrogenase PaaC; COG1250 3-hydroxyacyl-CoA dehydrogenase.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.909
AFR_25960	AFR_25965	AFR_25960	AFR_25965	Nitrilase; COG0388 Predicted amidohydrolase.	Hypothetical protein; COG0388 Predicted amidohydrolase.	0.783
AFR_25965	AFR_25960	AFR_25965	AFR_25960	Hypothetical protein; COG0388 Predicted amidohydrolase.	Nitrilase; COG0388 Predicted amidohydrolase.	0.783
AFR_25965	AFR_32230	AFR_25965	AFR_32230	Hypothetical protein; COG0388 Predicted amidohydrolase.	Hypothetical protein; COG0388 Predicted amidohydrolase.	0.439
AFR_32230	AFR_25965	AFR_32230	AFR_25965	Hypothetical protein; COG0388 Predicted amidohydrolase.	Hypothetical protein; COG0388 Predicted amidohydrolase.	0.439
AFR_37055	dnaK	AFR_37055	AFR_00520	Heat shock protein 70; COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.928
AFR_37295	AFR_20805	AFR_37295	AFR_20805	COG1250 3-hydroxyacyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase PaaC; COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.909
AFR_41090	AFR_12475	AFR_41090	AFR_12475	Heat shock protein 70; COG0443 Molecular chaperone.	Molecular chaperone DnaK.	0.474
dnaK	AFR_37055	AFR_00520	AFR_37055	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Heat shock protein 70; COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.	0.928