(10 nodes) Extracellular exosome network (Actinoplanes friuliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFR_25960	Nitrilase; COG0388 Predicted amidohydrolase. (278 aa)
	AFR_37295	COG1250 3-hydroxyacyl-CoA dehydrogenase. (282 aa)
	AFR_32230	Hypothetical protein; COG0388 Predicted amidohydrolase. (239 aa)
	AFR_31705	Selenium-binding protein 1. (467 aa)
	AFR_27550	Putative carbon-nitrogen hydrolase; COG0388 Predicted amidohydrolase. (279 aa)
	AFR_25965	Hypothetical protein; COG0388 Predicted amidohydrolase. (274 aa)
	AFR_20805	3-hydroxybutyryl-CoA dehydrogenase PaaC; COG1250 3-hydroxyacyl-CoA dehydrogenase. (285 aa)
	AFR_17080	COG0076 Glutamate decarboxylase and related PLP-dependent proteins. (490 aa)
	glyQS	glycyl-tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (459 aa)
	AFR_05615	Hypothetical protein; COG1607 Acyl-CoA hydrolase. (171 aa)

Your Current Organism:

Actinoplanes friuliensis

NCBI taxonomy Id: 1246995
Other names: A. friuliensis DSM 7358, Actinoplanes friuliensis DSM 7358, Actinoplanes friuliensis HAG 010964

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFR_20805	AFR_37295	3-hydroxybutyryl-CoA dehydrogenase PaaC; COG1250 3-hydroxyacyl-CoA dehydrogenase.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.909
AFR_25960	AFR_25965	Nitrilase; COG0388 Predicted amidohydrolase.	Hypothetical protein; COG0388 Predicted amidohydrolase.	0.783
AFR_25965	AFR_25960	Hypothetical protein; COG0388 Predicted amidohydrolase.	Nitrilase; COG0388 Predicted amidohydrolase.	0.783
AFR_25965	AFR_32230	Hypothetical protein; COG0388 Predicted amidohydrolase.	Hypothetical protein; COG0388 Predicted amidohydrolase.	0.439
AFR_32230	AFR_25965	Hypothetical protein; COG0388 Predicted amidohydrolase.	Hypothetical protein; COG0388 Predicted amidohydrolase.	0.439
AFR_37295	AFR_20805	COG1250 3-hydroxyacyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase PaaC; COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.909