STRINGSTRING
rplU rplU rpmA rpmA rplI rplI rpsR rpsR rpsP rpsP rplS rplS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa)
rpmARibosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (85 aa)
rplIRibosomal protein L9; Binds to the 23S rRNA. (148 aa)
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (114 aa)
rpsPRibosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (85 aa)
rplSRibosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (160 aa)
Your Current Organism:
Leptospira yanagawae
NCBI taxonomy Id: 1249483
Other names: L. yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523, Leptospira genomosp. 5 str. ATCC 700523, Leptospira yanagawae serovar Saopaulo str. ATCC 700523 = Sao Paulo, Leptospira yanagawae serovar Saopaulo str. Sao Paulo, Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523
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