STRINGSTRING
rpoH rpoH ALO45629.1 ALO45629.1 ALO46065.1 ALO46065.1 fliA fliA ALO46828.1 ALO46828.1 rpoD rpoD ALO45058.1 ALO45058.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoHRNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (291 aa)
ALO45629.1RNA polymerase sigma-70 factor; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
ALO46065.1RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (281 aa)
fliARNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (240 aa)
ALO46828.1RNA polymerase sigma-70 factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)
rpoDRNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (621 aa)
ALO45058.1RNA polymerase sigma-70 factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
Your Current Organism:
Pseudohongiella spirulinae
NCBI taxonomy Id: 1249552
Other names: KCTC 32221, LMG 27470, LMG:27470, Nonhongiella spirulinensis, P. spirulinae, Pseudohongiella spirulinae corrig. Wang et al. 2015, gamma proteobacterium Ma-20, strain Ma-20
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