19 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP33446.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (556 aa)
	AGP33619.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (237 aa)
	AGP33621.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (361 aa)
	AGP35293.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (146 aa)
	AGP36135.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (198 aa)
	AGP36924.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)
	AGP37363.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)
	AGP38453.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (132 aa)
	AGP39140.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AGP39141.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (212 aa)
	AGP39246.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (421 aa)
	AGP41178.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (327 aa)
	AGP41179.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (368 aa)
	AGP41180.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (188 aa)
	AGP41181.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (37 aa)
	AGP41182.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (604 aa)
	AGP41677.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (403 aa)
	AGP42107.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (104 aa)
	AGP42108.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (189 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33446.1	AGP33619.1	SCE1572_02315	SCE1572_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.429
AGP33446.1	AGP36135.1	SCE1572_02315	SCE1572_17500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
AGP33446.1	AGP39140.1	SCE1572_02315	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.544
AGP33619.1	AGP33446.1	SCE1572_03360	SCE1572_02315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.429
AGP33619.1	AGP33621.1	SCE1572_03360	SCE1572_03370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.565
AGP33619.1	AGP35293.1	SCE1572_03360	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP33619.1	AGP36135.1	SCE1572_03360	SCE1572_17500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.562
AGP33619.1	AGP41179.1	SCE1572_03360	SCE1572_45855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.549
AGP33621.1	AGP33619.1	SCE1572_03370	SCE1572_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.565
AGP35293.1	AGP33619.1	SCE1572_12665	SCE1572_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP35293.1	AGP38453.1	SCE1572_12665	SCE1572_30610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AGP35293.1	AGP39140.1	SCE1572_12665	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP36135.1	AGP33446.1	SCE1572_17500	SCE1572_02315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
AGP36135.1	AGP33619.1	SCE1572_17500	SCE1572_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.562
AGP36135.1	AGP39140.1	SCE1572_17500	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.569
AGP36135.1	AGP41179.1	SCE1572_17500	SCE1572_45855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
AGP38453.1	AGP35293.1	SCE1572_30610	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AGP38453.1	AGP39140.1	SCE1572_30610	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.668
AGP39140.1	AGP33446.1	SCE1572_34470	SCE1572_02315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.544
AGP39140.1	AGP35293.1	SCE1572_34470	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708