10 items (Sorangium cellulosum So01572) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP33446.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (556 aa)
	AGP33619.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (237 aa)
	AGP33621.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (361 aa)
	AGP35293.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (146 aa)
	AGP36135.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (198 aa)
	AGP36924.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)
	AGP38453.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (132 aa)
	AGP39140.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AGP39141.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (212 aa)
	AGP41677.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (403 aa)

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP33446.1	AGP33619.1	SCE1572_02315	SCE1572_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.429
AGP33446.1	AGP36135.1	SCE1572_02315	SCE1572_17500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
AGP33446.1	AGP39140.1	SCE1572_02315	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.544
AGP33619.1	AGP33446.1	SCE1572_03360	SCE1572_02315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.429
AGP33619.1	AGP33621.1	SCE1572_03360	SCE1572_03370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.565
AGP33619.1	AGP35293.1	SCE1572_03360	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP33619.1	AGP36135.1	SCE1572_03360	SCE1572_17500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.562
AGP33621.1	AGP33619.1	SCE1572_03370	SCE1572_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.565
AGP35293.1	AGP33619.1	SCE1572_12665	SCE1572_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP35293.1	AGP38453.1	SCE1572_12665	SCE1572_30610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AGP35293.1	AGP39140.1	SCE1572_12665	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP36135.1	AGP33446.1	SCE1572_17500	SCE1572_02315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
AGP36135.1	AGP33619.1	SCE1572_17500	SCE1572_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.562
AGP36135.1	AGP39140.1	SCE1572_17500	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.569
AGP38453.1	AGP35293.1	SCE1572_30610	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AGP38453.1	AGP39140.1	SCE1572_30610	SCE1572_34470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.668
AGP39140.1	AGP33446.1	SCE1572_34470	SCE1572_02315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.544
AGP39140.1	AGP35293.1	SCE1572_34470	SCE1572_12665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
AGP39140.1	AGP36135.1	SCE1572_34470	SCE1572_17500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.569
AGP39140.1	AGP38453.1	SCE1572_34470	SCE1572_30610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.668